Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03885 and MMP_RS03890 are separated by 9 nucleotides MMP_RS03890 and MMP_RS08995 are separated by 2 nucleotides MMP_RS08995 and MMP_RS09000 are separated by 12 nucleotides MMP_RS09000 and MMP_RS03895 are separated by 332 nucleotides MMP_RS03895 and MMP_RS03900 are separated by 10 nucleotides
MMP_RS03885: MMP_RS03885 - tyrosine-type recombinase/integrase, at 737,294 to 738,268
_RS03885
MMP_RS03890: MMP_RS03890 - DUF2540 domain-containing protein, at 738,278 to 738,538
_RS03890
MMP_RS08995: MMP_RS08995 - hypothetical protein, at 738,541 to 738,699
_RS08995
MMP_RS09000: MMP_RS09000 - hypothetical protein, at 738,712 to 738,867
_RS09000
MMP_RS03895: MMP_RS03895 - hypothetical protein, at 739,200 to 739,430
_RS03895
MMP_RS03900: MMP_RS03900 - minichromosome maintenance protein MCM, at 739,441 to 741,447
_RS03900
Position (kb) 738
739 Strain fitness (log2 ratio) -1
0
1 at 737.286 kb on + strand at 737.300 kb on - strand at 737.314 kb on - strand at 737.318 kb on - strand at 737.355 kb on - strand at 737.626 kb on + strand, within MMP_RS03885 at 737.690 kb on + strand, within MMP_RS03885 at 737.734 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.878 kb on + strand, within MMP_RS03885 at 738.065 kb on - strand, within MMP_RS03885 at 738.192 kb on - strand at 738.193 kb on + strand at 738.273 kb on + strand at 738.290 kb on - strand at 738.330 kb on + strand, within MMP_RS03890 at 738.435 kb on + strand, within MMP_RS03890 at 738.457 kb on - strand, within MMP_RS03890 at 738.464 kb on - strand, within MMP_RS03890 at 738.470 kb on + strand, within MMP_RS03890 at 738.473 kb on - strand, within MMP_RS03890 at 738.474 kb on + strand, within MMP_RS03890 at 738.524 kb on - strand at 738.539 kb on + strand at 738.543 kb on + strand at 738.595 kb on + strand, within MMP_RS08995 at 739.090 kb on - strand at 739.211 kb on - strand at 739.213 kb on - strand at 739.257 kb on + strand, within MMP_RS03895 at 739.308 kb on - strand, within MMP_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 737,286 + +0.2 737,300 - -0.2 737,314 - -0.1 737,318 - +0.3 737,355 - -0.2 737,626 + MMP_RS03885 0.34 +0.4 737,690 + MMP_RS03885 0.41 +0.0 737,734 + MMP_RS03885 0.45 +0.2 737,852 + MMP_RS03885 0.57 +0.1 737,852 + MMP_RS03885 0.57 +0.2 737,852 + MMP_RS03885 0.57 -0.2 737,853 - MMP_RS03885 0.57 -0.4 737,853 - MMP_RS03885 0.57 -0.3 737,853 - MMP_RS03885 0.57 +0.0 737,854 + MMP_RS03885 0.57 +0.1 737,854 + MMP_RS03885 0.57 -0.1 737,854 + MMP_RS03885 0.57 +0.4 737,878 + MMP_RS03885 0.60 +0.2 738,065 - MMP_RS03885 0.79 +0.5 738,192 - -0.1 738,193 + +0.3 738,273 + -0.8 738,290 - +0.6 738,330 + MMP_RS03890 0.20 -0.0 738,435 + MMP_RS03890 0.60 -0.0 738,457 - MMP_RS03890 0.69 +0.2 738,464 - MMP_RS03890 0.71 +0.5 738,470 + MMP_RS03890 0.74 +0.1 738,473 - MMP_RS03890 0.75 +0.5 738,474 + MMP_RS03890 0.75 +0.5 738,524 - -0.1 738,539 + -0.1 738,543 + +0.3 738,595 + MMP_RS08995 0.34 +0.3 739,090 - -0.0 739,211 - +0.4 739,213 - -0.1 739,257 + MMP_RS03895 0.25 -0.1 739,308 - MMP_RS03895 0.47 +0.0
Or see this region's nucleotide sequence