Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03385

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03380 and MMP_RS03385 are separated by 4 nucleotidesMMP_RS03385 and MMP_RS03390 are separated by 16 nucleotides MMP_RS03380: MMP_RS03380 - DUF354 domain-containing protein, at 634,967 to 635,980 _RS03380 MMP_RS03385: MMP_RS03385 - cation diffusion facilitator family transporter, at 635,985 to 636,860 _RS03385 MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821 _RS03390 Position (kb) 635 636 637Strain fitness (log2 ratio) -1 0 1at 635.869 kb on + strandat 635.973 kb on - strandat 635.978 kb on - strandat 636.014 kb on - strandat 636.290 kb on - strand, within MMP_RS03385at 636.837 kb on + strandat 636.883 kb on + strandat 636.914 kb on + strandat 637.060 kb on + strand, within MMP_RS03390at 637.095 kb on - strand, within MMP_RS03390at 637.102 kb on - strand, within MMP_RS03390at 637.156 kb on - strand, within MMP_RS03390at 637.352 kb on + strand, within MMP_RS03390at 637.433 kb on - strand, within MMP_RS03390at 637.441 kb on - strand, within MMP_RS03390at 637.469 kb on + strand, within MMP_RS03390at 637.476 kb on - strand, within MMP_RS03390at 637.502 kb on + strand, within MMP_RS03390at 637.582 kb on + strand, within MMP_RS03390at 637.586 kb on + strand, within MMP_RS03390at 637.594 kb on + strand, within MMP_RS03390at 637.821 kb on - strandat 637.836 kb on - strandat 637.837 kb on + strandat 637.841 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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635,869 + -1.4
635,973 - -0.2
635,978 - +0.3
636,014 - +0.6
636,290 - MMP_RS03385 0.35 -0.5
636,837 + -0.0
636,883 + +1.2
636,914 + +0.5
637,060 + MMP_RS03390 0.19 +0.6
637,095 - MMP_RS03390 0.23 +0.4
637,102 - MMP_RS03390 0.24 -1.0
637,156 - MMP_RS03390 0.30 +0.1
637,352 + MMP_RS03390 0.50 +0.2
637,433 - MMP_RS03390 0.59 -0.5
637,441 - MMP_RS03390 0.60 +0.5
637,469 + MMP_RS03390 0.63 -0.2
637,476 - MMP_RS03390 0.63 -0.1
637,502 + MMP_RS03390 0.66 +0.2
637,582 + MMP_RS03390 0.75 +1.1
637,586 + MMP_RS03390 0.75 +0.3
637,594 + MMP_RS03390 0.76 +0.2
637,821 - +0.3
637,836 - +0.1
637,837 + +0.6
637,841 + +0.2

Or see this region's nucleotide sequence