Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03210 and MMP_RS03215 are separated by 52 nucleotides MMP_RS03215 and MMP_RS03220 are separated by 1 nucleotides MMP_RS03220 and MMP_RS08955 are separated by 8 nucleotides MMP_RS08955 and MMP_RS03225 are separated by 80 nucleotides
MMP_RS03210: MMP_RS03210 - tRNA guanosine(15) transglycosylase TgtA, at 604,972 to 606,921
_RS03210
MMP_RS03215: MMP_RS03215 - MBL fold metallo-hydrolase, at 606,974 to 607,516
_RS03215
MMP_RS03220: MMP_RS03220 - RNA 2' 3'-cyclic phosphodiesterase, at 607,518 to 608,042
_RS03220
MMP_RS08955: MMP_RS08955 - hypothetical protein, at 608,051 to 608,197
_RS08955
MMP_RS03225: MMP_RS03225 - acetolactate decarboxylase, at 608,278 to 609,078
_RS03225
Position (kb) 606
607
608 Strain fitness (log2 ratio) -1
0
1 at 606.018 kb on - strand, within MMP_RS03210 at 606.028 kb on - strand, within MMP_RS03210 at 606.092 kb on + strand, within MMP_RS03210 at 606.106 kb on + strand, within MMP_RS03210 at 606.106 kb on + strand, within MMP_RS03210 at 606.163 kb on - strand, within MMP_RS03210 at 606.187 kb on + strand, within MMP_RS03210 at 606.212 kb on - strand, within MMP_RS03210 at 606.213 kb on + strand, within MMP_RS03210 at 606.240 kb on + strand, within MMP_RS03210 at 606.401 kb on - strand, within MMP_RS03210 at 606.410 kb on + strand, within MMP_RS03210 at 606.410 kb on + strand, within MMP_RS03210 at 606.415 kb on - strand, within MMP_RS03210 at 606.419 kb on + strand, within MMP_RS03210 at 606.422 kb on - strand, within MMP_RS03210 at 606.423 kb on + strand, within MMP_RS03210 at 606.423 kb on + strand, within MMP_RS03210 at 606.503 kb on + strand, within MMP_RS03210 at 606.665 kb on - strand, within MMP_RS03210 at 606.698 kb on - strand, within MMP_RS03210 at 606.848 kb on - strand at 606.851 kb on - strand at 606.851 kb on - strand at 606.934 kb on + strand at 606.944 kb on - strand at 606.990 kb on + strand at 607.054 kb on - strand, within MMP_RS03215 at 607.055 kb on + strand, within MMP_RS03215 at 607.059 kb on + strand, within MMP_RS03215 at 607.170 kb on + strand, within MMP_RS03215 at 607.172 kb on + strand, within MMP_RS03215 at 607.172 kb on + strand, within MMP_RS03215 at 607.174 kb on - strand, within MMP_RS03215 at 607.175 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.177 kb on + strand, within MMP_RS03215 at 607.241 kb on + strand, within MMP_RS03215 at 607.330 kb on + strand, within MMP_RS03215 at 607.343 kb on - strand, within MMP_RS03215 at 607.405 kb on - strand, within MMP_RS03215 at 607.414 kb on + strand, within MMP_RS03215 at 607.414 kb on + strand, within MMP_RS03215 at 607.453 kb on + strand, within MMP_RS03215 at 607.474 kb on + strand at 607.474 kb on + strand at 607.520 kb on + strand at 607.559 kb on - strand at 607.560 kb on + strand at 607.560 kb on + strand at 607.569 kb on + strand at 607.927 kb on + strand, within MMP_RS03220 at 607.927 kb on + strand, within MMP_RS03220 at 608.230 kb on - strand at 608.245 kb on + strand at 608.262 kb on + strand at 608.331 kb on - strand at 608.462 kb on - strand, within MMP_RS03225 at 608.483 kb on - strand, within MMP_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 606,018 - MMP_RS03210 0.54 +0.1 606,028 - MMP_RS03210 0.54 +0.3 606,092 + MMP_RS03210 0.57 +0.3 606,106 + MMP_RS03210 0.58 -0.7 606,106 + MMP_RS03210 0.58 -0.5 606,163 - MMP_RS03210 0.61 +0.4 606,187 + MMP_RS03210 0.62 +0.1 606,212 - MMP_RS03210 0.64 -0.2 606,213 + MMP_RS03210 0.64 +0.2 606,240 + MMP_RS03210 0.65 -0.3 606,401 - MMP_RS03210 0.73 -1.1 606,410 + MMP_RS03210 0.74 +0.2 606,410 + MMP_RS03210 0.74 -0.8 606,415 - MMP_RS03210 0.74 -0.1 606,419 + MMP_RS03210 0.74 -0.7 606,422 - MMP_RS03210 0.74 -0.3 606,423 + MMP_RS03210 0.74 -0.2 606,423 + MMP_RS03210 0.74 -0.2 606,503 + MMP_RS03210 0.79 -0.3 606,665 - MMP_RS03210 0.87 -0.8 606,698 - MMP_RS03210 0.89 -0.1 606,848 - -0.2 606,851 - -0.0 606,851 - -0.4 606,934 + +0.4 606,944 - +0.3 606,990 + +0.7 607,054 - MMP_RS03215 0.15 +0.0 607,055 + MMP_RS03215 0.15 +0.2 607,059 + MMP_RS03215 0.16 +0.1 607,170 + MMP_RS03215 0.36 +0.4 607,172 + MMP_RS03215 0.36 -1.0 607,172 + MMP_RS03215 0.36 +1.1 607,174 - MMP_RS03215 0.37 +0.5 607,175 + MMP_RS03215 0.37 +0.2 607,177 + MMP_RS03215 0.37 +1.4 607,177 + MMP_RS03215 0.37 +0.4 607,177 + MMP_RS03215 0.37 +1.1 607,177 + MMP_RS03215 0.37 +0.1 607,241 + MMP_RS03215 0.49 +0.4 607,330 + MMP_RS03215 0.66 +0.1 607,343 - MMP_RS03215 0.68 +0.5 607,405 - MMP_RS03215 0.79 +0.5 607,414 + MMP_RS03215 0.81 +0.8 607,414 + MMP_RS03215 0.81 +0.2 607,453 + MMP_RS03215 0.88 +0.4 607,474 + +1.1 607,474 + +0.3 607,520 + +0.1 607,559 - -0.3 607,560 + +0.0 607,560 + -0.8 607,569 + +0.1 607,927 + MMP_RS03220 0.78 -0.3 607,927 + MMP_RS03220 0.78 -0.4 608,230 - +0.8 608,245 + +0.4 608,262 + -0.2 608,331 - +0.3 608,462 - MMP_RS03225 0.23 +0.2 608,483 - MMP_RS03225 0.26 -0.2
Or see this region's nucleotide sequence