Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02840

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02830 and MMP_RS02835 are separated by 148 nucleotidesMMP_RS02835 and MMP_RS02840 are separated by 23 nucleotidesMMP_RS02840 and MMP_RS02845 are separated by 94 nucleotidesMMP_RS02845 and MMP_RS02850 are separated by 164 nucleotides MMP_RS02830: MMP_RS02830 - DUF432 domain-containing protein, at 540,277 to 540,915 _RS02830 MMP_RS02835: MMP_RS02835 - CGGC domain-containing protein, at 541,064 to 541,477 _RS02835 MMP_RS02840: MMP_RS02840 - DUF123 domain-containing protein, at 541,501 to 542,571 _RS02840 MMP_RS02845: MMP_RS02845 - hypothetical protein, at 542,666 to 543,277 _RS02845 MMP_RS02850: MMP_RS02850 - hypothetical protein, at 543,442 to 543,732 _RS02850 Position (kb) 541 542 543Strain fitness (log2 ratio) -1 0 1at 540.538 kb on + strand, within MMP_RS02830at 540.541 kb on - strand, within MMP_RS02830at 540.542 kb on + strand, within MMP_RS02830at 540.574 kb on - strand, within MMP_RS02830at 540.575 kb on + strand, within MMP_RS02830at 540.575 kb on + strand, within MMP_RS02830at 540.629 kb on + strand, within MMP_RS02830at 540.649 kb on - strand, within MMP_RS02830at 540.678 kb on + strand, within MMP_RS02830at 540.827 kb on - strand, within MMP_RS02830at 540.915 kb on - strandat 540.919 kb on + strandat 540.921 kb on - strandat 540.922 kb on + strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.923 kb on - strandat 540.925 kb on - strandat 540.925 kb on - strandat 540.925 kb on - strandat 540.925 kb on - strandat 540.926 kb on + strandat 540.972 kb on + strandat 541.175 kb on + strand, within MMP_RS02835at 541.222 kb on - strand, within MMP_RS02835at 541.238 kb on - strand, within MMP_RS02835at 541.350 kb on - strand, within MMP_RS02835at 541.454 kb on - strandat 541.456 kb on - strandat 541.456 kb on - strandat 541.457 kb on + strandat 541.460 kb on - strandat 541.519 kb on - strandat 541.654 kb on - strand, within MMP_RS02840at 541.835 kb on - strand, within MMP_RS02840at 541.836 kb on + strand, within MMP_RS02840at 542.213 kb on + strand, within MMP_RS02840at 542.245 kb on + strand, within MMP_RS02840at 542.247 kb on + strand, within MMP_RS02840at 542.250 kb on - strand, within MMP_RS02840at 542.293 kb on + strand, within MMP_RS02840at 542.607 kb on - strandat 542.610 kb on - strandat 542.739 kb on - strand, within MMP_RS02845at 542.740 kb on + strand, within MMP_RS02845at 542.792 kb on - strand, within MMP_RS02845at 542.795 kb on + strand, within MMP_RS02845at 542.806 kb on - strand, within MMP_RS02845at 542.807 kb on + strand, within MMP_RS02845at 542.808 kb on - strand, within MMP_RS02845at 542.808 kb on - strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.815 kb on + strand, within MMP_RS02845at 542.834 kb on + strand, within MMP_RS02845at 542.869 kb on - strand, within MMP_RS02845at 542.870 kb on + strand, within MMP_RS02845at 542.870 kb on + strand, within MMP_RS02845at 543.047 kb on + strand, within MMP_RS02845at 543.057 kb on - strand, within MMP_RS02845at 543.068 kb on - strand, within MMP_RS02845at 543.119 kb on + strand, within MMP_RS02845at 543.175 kb on + strand, within MMP_RS02845at 543.179 kb on - strand, within MMP_RS02845at 543.193 kb on - strand, within MMP_RS02845at 543.193 kb on - strand, within MMP_RS02845at 543.196 kb on + strand, within MMP_RS02845at 543.196 kb on + strand, within MMP_RS02845at 543.238 kb on - strandat 543.241 kb on - strandat 543.242 kb on + strandat 543.242 kb on + strandat 543.243 kb on - strandat 543.276 kb on + strandat 543.300 kb on - strandat 543.321 kb on + strandat 543.331 kb on + strandat 543.337 kb on + strandat 543.361 kb on + strandat 543.364 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.371 kb on - strandat 543.371 kb on - strandat 543.372 kb on + strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.401 kb on - strandat 543.403 kb on - strandat 543.404 kb on + strandat 543.439 kb on + strandat 543.492 kb on - strand, within MMP_RS02850at 543.492 kb on - strand, within MMP_RS02850at 543.492 kb on - strand, within MMP_RS02850at 543.493 kb on + strand, within MMP_RS02850at 543.493 kb on + strand, within MMP_RS02850at 543.494 kb on - strand, within MMP_RS02850at 543.495 kb on + strand, within MMP_RS02850at 543.547 kb on + strand, within MMP_RS02850at 543.547 kb on + strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.550 kb on - strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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540,538 + MMP_RS02830 0.41 -0.3
540,541 - MMP_RS02830 0.41 -0.1
540,542 + MMP_RS02830 0.41 +0.0
540,574 - MMP_RS02830 0.46 -0.8
540,575 + MMP_RS02830 0.47 -0.2
540,575 + MMP_RS02830 0.47 +0.3
540,629 + MMP_RS02830 0.55 -0.2
540,649 - MMP_RS02830 0.58 -0.2
540,678 + MMP_RS02830 0.63 -1.1
540,827 - MMP_RS02830 0.86 -0.4
540,915 - +0.4
540,919 + -0.4
540,921 - +0.5
540,922 + -0.3
540,923 - +1.0
540,923 - -1.3
540,923 - +0.1
540,923 - +0.3
540,923 - +0.0
540,925 - +0.2
540,925 - -0.3
540,925 - -0.3
540,925 - +0.2
540,926 + +0.5
540,972 + +0.2
541,175 + MMP_RS02835 0.27 -0.3
541,222 - MMP_RS02835 0.38 +0.2
541,238 - MMP_RS02835 0.42 +0.0
541,350 - MMP_RS02835 0.69 -0.6
541,454 - +0.2
541,456 - -0.2
541,456 - +0.0
541,457 + +0.2
541,460 - +0.1
541,519 - +0.0
541,654 - MMP_RS02840 0.14 +0.7
541,835 - MMP_RS02840 0.31 -0.1
541,836 + MMP_RS02840 0.31 +0.3
542,213 + MMP_RS02840 0.66 +0.4
542,245 + MMP_RS02840 0.69 -0.2
542,247 + MMP_RS02840 0.70 +0.1
542,250 - MMP_RS02840 0.70 -0.2
542,293 + MMP_RS02840 0.74 +0.2
542,607 - -0.7
542,610 - -0.3
542,739 - MMP_RS02845 0.12 +0.3
542,740 + MMP_RS02845 0.12 +0.4
542,792 - MMP_RS02845 0.21 +0.2
542,795 + MMP_RS02845 0.21 +0.1
542,806 - MMP_RS02845 0.23 +0.0
542,807 + MMP_RS02845 0.23 +0.5
542,808 - MMP_RS02845 0.23 +0.7
542,808 - MMP_RS02845 0.23 +0.5
542,809 + MMP_RS02845 0.23 +0.3
542,809 + MMP_RS02845 0.23 +0.2
542,809 + MMP_RS02845 0.23 -0.1
542,809 + MMP_RS02845 0.23 -0.7
542,815 + MMP_RS02845 0.24 +0.1
542,834 + MMP_RS02845 0.27 +0.4
542,869 - MMP_RS02845 0.33 -0.1
542,870 + MMP_RS02845 0.33 -0.8
542,870 + MMP_RS02845 0.33 +0.5
543,047 + MMP_RS02845 0.62 +0.6
543,057 - MMP_RS02845 0.64 -0.9
543,068 - MMP_RS02845 0.66 +0.1
543,119 + MMP_RS02845 0.74 -0.1
543,175 + MMP_RS02845 0.83 -0.0
543,179 - MMP_RS02845 0.84 -0.2
543,193 - MMP_RS02845 0.86 +0.1
543,193 - MMP_RS02845 0.86 +0.2
543,196 + MMP_RS02845 0.87 +0.2
543,196 + MMP_RS02845 0.87 -0.1
543,238 - -0.1
543,241 - +1.0
543,242 + +0.3
543,242 + -0.2
543,243 - -0.1
543,276 + +0.9
543,300 - -0.3
543,321 + -0.4
543,331 + -0.3
543,337 + -0.4
543,361 + -0.4
543,364 - +0.4
543,367 - +0.1
543,367 - +0.2
543,369 - +0.2
543,369 - +0.1
543,369 - -0.3
543,369 - +0.0
543,369 - +0.3
543,369 - +0.0
543,369 - +0.1
543,370 + -0.0
543,370 + +0.4
543,370 + -0.3
543,370 + +0.2
543,370 + +0.5
543,371 - +0.2
543,371 - -0.2
543,372 + -0.2
543,373 - +0.4
543,373 - -0.4
543,373 - +0.3
543,373 - +0.4
543,373 - +0.1
543,373 - +0.1
543,374 + -0.1
543,374 + +0.4
543,374 + -0.2
543,374 + +0.1
543,401 - -0.3
543,403 - +0.7
543,404 + -0.2
543,439 + -0.0
543,492 - MMP_RS02850 0.17 -0.2
543,492 - MMP_RS02850 0.17 -0.1
543,492 - MMP_RS02850 0.17 +0.3
543,493 + MMP_RS02850 0.18 -0.3
543,493 + MMP_RS02850 0.18 +0.6
543,494 - MMP_RS02850 0.18 -0.2
543,495 + MMP_RS02850 0.18 +0.1
543,547 + MMP_RS02850 0.36 +0.2
543,547 + MMP_RS02850 0.36 -0.1
543,548 - MMP_RS02850 0.36 +0.4
543,548 - MMP_RS02850 0.36 -0.2
543,548 - MMP_RS02850 0.36 +0.2
543,549 + MMP_RS02850 0.37 +0.8
543,549 + MMP_RS02850 0.37 +0.2
543,549 + MMP_RS02850 0.37 +0.4
543,550 - MMP_RS02850 0.37 -0.1
543,551 + MMP_RS02850 0.37 -0.3
543,551 + MMP_RS02850 0.37 +0.3
543,551 + MMP_RS02850 0.37 +0.3
543,551 + MMP_RS02850 0.37 -0.6
543,551 + MMP_RS02850 0.37 -0.2

Or see this region's nucleotide sequence