Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02260

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02250 and MMP_RS02255 are separated by 126 nucleotidesMMP_RS02255 and MMP_RS02260 are separated by 406 nucleotidesMMP_RS02260 and MMP_RS02265 are separated by 13 nucleotidesMMP_RS02265 and MMP_RS02270 are separated by 62 nucleotides MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188 _RS02250 MMP_RS02255: MMP_RS02255 - hypothetical protein, at 426,315 to 426,530 _RS02255 MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578 _RS02260 MMP_RS02265: MMP_RS02265 - nitroreductase family protein, at 427,592 to 428,161 _RS02265 MMP_RS02270: MMP_RS02270 - replication factor C small subunit, at 428,224 to 429,171 _RS02270 Position (kb) 426 427 428Strain fitness (log2 ratio) -2 -1 0 1at 426.002 kb on - strand, within MMP_RS02250at 426.008 kb on - strand, within MMP_RS02250at 426.026 kb on - strand, within MMP_RS02250at 426.026 kb on - strand, within MMP_RS02250at 426.027 kb on + strand, within MMP_RS02250at 426.027 kb on + strand, within MMP_RS02250at 426.062 kb on - strandat 426.063 kb on + strandat 426.186 kb on - strandat 426.221 kb on + strandat 426.385 kb on - strand, within MMP_RS02255at 426.402 kb on + strand, within MMP_RS02255at 426.402 kb on + strand, within MMP_RS02255at 426.456 kb on - strand, within MMP_RS02255at 426.461 kb on - strand, within MMP_RS02255at 426.486 kb on + strand, within MMP_RS02255at 426.506 kb on - strand, within MMP_RS02255at 426.506 kb on - strand, within MMP_RS02255at 426.567 kb on - strandat 426.568 kb on + strandat 426.571 kb on - strandat 426.578 kb on + strandat 426.609 kb on + strandat 426.613 kb on - strandat 426.654 kb on + strandat 426.672 kb on + strandat 426.688 kb on - strandat 426.733 kb on + strandat 426.780 kb on - strandat 426.842 kb on - strandat 426.868 kb on - strandat 426.869 kb on + strandat 426.874 kb on - strandat 426.874 kb on - strandat 426.874 kb on - strandat 426.875 kb on + strandat 426.875 kb on + strandat 426.883 kb on - strandat 426.884 kb on + strandat 427.051 kb on - strand, within MMP_RS02260at 427.051 kb on - strand, within MMP_RS02260at 427.052 kb on + strand, within MMP_RS02260at 427.053 kb on - strand, within MMP_RS02260at 427.063 kb on - strand, within MMP_RS02260at 427.064 kb on + strand, within MMP_RS02260at 427.123 kb on + strand, within MMP_RS02260at 427.204 kb on + strand, within MMP_RS02260at 427.204 kb on + strand, within MMP_RS02260at 427.205 kb on - strand, within MMP_RS02260at 427.205 kb on - strand, within MMP_RS02260at 427.232 kb on - strand, within MMP_RS02260at 427.236 kb on - strand, within MMP_RS02260at 427.277 kb on - strand, within MMP_RS02260at 427.277 kb on - strand, within MMP_RS02260at 427.356 kb on - strand, within MMP_RS02260at 427.469 kb on - strand, within MMP_RS02260at 427.505 kb on + strand, within MMP_RS02260at 427.516 kb on + strandat 427.539 kb on - strandat 427.540 kb on + strandat 427.557 kb on + strandat 427.735 kb on - strand, within MMP_RS02265at 428.018 kb on - strand, within MMP_RS02265at 428.019 kb on + strand, within MMP_RS02265at 428.024 kb on + strand, within MMP_RS02265at 428.151 kb on + strandat 428.225 kb on - strandat 428.230 kb on - strandat 428.261 kb on + strandat 428.384 kb on + strandat 428.387 kb on + strandat 428.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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426,002 - MMP_RS02250 0.87 +0.1
426,008 - MMP_RS02250 0.87 +0.1
426,026 - MMP_RS02250 0.88 -0.3
426,026 - MMP_RS02250 0.88 -0.2
426,027 + MMP_RS02250 0.88 -0.0
426,027 + MMP_RS02250 0.88 -0.1
426,062 - -0.0
426,063 + +0.9
426,186 - -0.2
426,221 + +0.2
426,385 - MMP_RS02255 0.32 +0.8
426,402 + MMP_RS02255 0.40 -0.0
426,402 + MMP_RS02255 0.40 +0.1
426,456 - MMP_RS02255 0.65 +0.0
426,461 - MMP_RS02255 0.68 +0.1
426,486 + MMP_RS02255 0.79 +0.0
426,506 - MMP_RS02255 0.88 +0.3
426,506 - MMP_RS02255 0.88 +0.5
426,567 - -0.0
426,568 + -0.2
426,571 - -0.2
426,578 + +0.7
426,609 + +0.5
426,613 - +0.3
426,654 + +0.0
426,672 + +0.1
426,688 - -0.5
426,733 + +0.4
426,780 - -0.1
426,842 - +0.2
426,868 - -0.3
426,869 + -0.1
426,874 - +1.7
426,874 - -0.4
426,874 - +0.5
426,875 + +0.2
426,875 + -0.4
426,883 - +0.3
426,884 + -0.3
427,051 - MMP_RS02260 0.18 +0.4
427,051 - MMP_RS02260 0.18 +0.1
427,052 + MMP_RS02260 0.18 -0.3
427,053 - MMP_RS02260 0.18 -0.2
427,063 - MMP_RS02260 0.20 +0.5
427,064 + MMP_RS02260 0.20 +0.5
427,123 + MMP_RS02260 0.29 +0.2
427,204 + MMP_RS02260 0.42 +0.2
427,204 + MMP_RS02260 0.42 +1.1
427,205 - MMP_RS02260 0.42 -0.4
427,205 - MMP_RS02260 0.42 -0.3
427,232 - MMP_RS02260 0.46 +0.5
427,236 - MMP_RS02260 0.47 +0.1
427,277 - MMP_RS02260 0.53 +0.1
427,277 - MMP_RS02260 0.53 +0.0
427,356 - MMP_RS02260 0.65 +0.1
427,469 - MMP_RS02260 0.83 +0.6
427,505 + MMP_RS02260 0.88 +0.4
427,516 + +0.2
427,539 - +0.1
427,540 + +0.2
427,557 + -0.6
427,735 - MMP_RS02265 0.25 +0.2
428,018 - MMP_RS02265 0.75 -0.6
428,019 + MMP_RS02265 0.75 -0.0
428,024 + MMP_RS02265 0.76 +0.2
428,151 + +0.1
428,225 - -0.1
428,230 - +0.2
428,261 + -2.3
428,384 + -1.2
428,387 + -1.4
428,427 + -2.6

Or see this region's nucleotide sequence