Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02165 and MMP_RS02170 are separated by 14 nucleotides MMP_RS02170 and MMP_RS02175 are separated by 158 nucleotides MMP_RS02175 and MMP_RS02180 are separated by 19 nucleotides
MMP_RS02165: MMP_RS02165 - tRNA-dihydrouridine synthase, at 405,344 to 406,114
_RS02165
MMP_RS02170: MMP_RS02170 - CBS domain-containing protein, at 406,129 to 406,542
_RS02170
MMP_RS02175: MMP_RS02175 - DUF1611 domain-containing protein, at 406,701 to 407,621
_RS02175
MMP_RS02180: MMP_RS02180 - GMC oxidoreductase, at 407,641 to 408,801
_RS02180
Position (kb) 406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 405.842 kb on + strand, within MMP_RS02165 at 405.910 kb on - strand, within MMP_RS02165 at 405.910 kb on - strand, within MMP_RS02165 at 405.910 kb on - strand, within MMP_RS02165 at 405.911 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.913 kb on + strand, within MMP_RS02165 at 405.949 kb on + strand, within MMP_RS02165 at 406.078 kb on + strand at 406.087 kb on - strand at 406.087 kb on - strand at 406.088 kb on + strand at 406.117 kb on + strand at 406.117 kb on + strand at 406.117 kb on + strand at 406.121 kb on - strand at 406.130 kb on - strand at 406.135 kb on - strand at 406.200 kb on - strand, within MMP_RS02170 at 406.220 kb on + strand, within MMP_RS02170 at 406.354 kb on - strand, within MMP_RS02170 at 406.354 kb on - strand, within MMP_RS02170 at 406.509 kb on - strand at 406.562 kb on - strand at 406.566 kb on + strand at 406.592 kb on + strand at 406.602 kb on + strand at 406.626 kb on - strand at 406.770 kb on + strand at 406.772 kb on + strand at 406.772 kb on + strand at 407.408 kb on + strand, within MMP_RS02175 at 407.638 kb on + strand at 407.741 kb on - strand at 407.741 kb on - strand at 407.838 kb on - strand at 407.989 kb on - strand at 407.989 kb on - strand at 407.990 kb on + strand at 408.030 kb on - strand at 408.037 kb on - strand at 408.184 kb on + strand at 408.218 kb on + strand at 408.233 kb on + strand at 408.556 kb on - strand at 408.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 405,842 + MMP_RS02165 0.65 -0.5 405,910 - MMP_RS02165 0.73 -0.2 405,910 - MMP_RS02165 0.73 -1.0 405,910 - MMP_RS02165 0.73 -0.8 405,911 + MMP_RS02165 0.74 -1.4 405,913 + MMP_RS02165 0.74 -0.7 405,913 + MMP_RS02165 0.74 -1.7 405,913 + MMP_RS02165 0.74 -0.8 405,913 + MMP_RS02165 0.74 -0.2 405,913 + MMP_RS02165 0.74 -0.6 405,913 + MMP_RS02165 0.74 -1.5 405,949 + MMP_RS02165 0.78 -1.2 406,078 + -1.8 406,087 - -1.0 406,087 - -1.2 406,088 + -0.9 406,117 + -0.6 406,117 + +1.0 406,117 + -0.1 406,121 - -0.3 406,130 - -0.0 406,135 - -0.3 406,200 - MMP_RS02170 0.17 -0.5 406,220 + MMP_RS02170 0.22 -0.1 406,354 - MMP_RS02170 0.54 -0.5 406,354 - MMP_RS02170 0.54 -0.1 406,509 - -0.1 406,562 - -0.1 406,566 + -0.5 406,592 + -0.2 406,602 + +0.2 406,626 - -0.9 406,770 + +0.3 406,772 + -0.3 406,772 + -0.6 407,408 + MMP_RS02175 0.77 -0.6 407,638 + +0.2 407,741 - -2.4 407,741 - -1.3 407,838 - -1.9 407,989 - -1.1 407,989 - -0.3 407,990 + -1.5 408,030 - -2.6 408,037 - -0.4 408,184 + -3.3 408,218 + -0.0 408,233 + -1.3 408,556 - -0.0 408,557 + -1.3
Or see this region's nucleotide sequence