Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01940

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01935 and MMP_RS01940 are separated by 3 nucleotidesMMP_RS01940 and MMP_RS01945 overlap by 26 nucleotidesMMP_RS01945 and MMP_RS01950 overlap by 1 nucleotides MMP_RS01935: MMP_RS01935 - DUF58 domain-containing protein, at 358,253 to 359,554 _RS01935 MMP_RS01940: MMP_RS01940 - MoxR family ATPase, at 359,558 to 360,499 _RS01940 MMP_RS01945: MMP_RS01945 - DUF4350 domain-containing protein, at 360,474 to 361,472 _RS01945 MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307 _RS01950 Position (kb) 359 360 361Strain fitness (log2 ratio) -2 -1 0 1at 358.618 kb on - strand, within MMP_RS01935at 358.621 kb on - strand, within MMP_RS01935at 358.665 kb on + strand, within MMP_RS01935at 358.670 kb on + strand, within MMP_RS01935at 358.678 kb on - strand, within MMP_RS01935at 358.679 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.782 kb on - strand, within MMP_RS01935at 358.783 kb on + strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.787 kb on - strand, within MMP_RS01935at 358.788 kb on + strand, within MMP_RS01935at 358.811 kb on - strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.862 kb on + strand, within MMP_RS01935at 358.864 kb on - strand, within MMP_RS01935at 358.865 kb on + strand, within MMP_RS01935at 358.957 kb on - strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 359.090 kb on + strand, within MMP_RS01935at 359.117 kb on + strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.195 kb on - strand, within MMP_RS01935at 359.445 kb on + strandat 359.445 kb on + strandat 359.446 kb on - strandat 359.446 kb on - strandat 359.446 kb on - strandat 359.447 kb on + strandat 359.483 kb on - strandat 359.483 kb on - strandat 359.486 kb on + strandat 359.529 kb on - strandat 359.529 kb on - strandat 359.529 kb on - strandat 359.591 kb on + strandat 359.662 kb on - strand, within MMP_RS01940at 359.712 kb on - strand, within MMP_RS01940at 359.789 kb on - strand, within MMP_RS01940at 360.037 kb on + strand, within MMP_RS01940at 360.099 kb on + strand, within MMP_RS01940at 360.176 kb on + strand, within MMP_RS01940at 360.180 kb on + strand, within MMP_RS01940at 360.458 kb on - strandat 360.480 kb on + strandat 360.513 kb on - strandat 360.514 kb on + strandat 360.518 kb on - strandat 360.612 kb on + strand, within MMP_RS01945at 360.649 kb on + strand, within MMP_RS01945at 360.743 kb on - strand, within MMP_RS01945at 360.884 kb on - strand, within MMP_RS01945at 360.885 kb on + strand, within MMP_RS01945at 360.901 kb on - strand, within MMP_RS01945at 360.906 kb on - strand, within MMP_RS01945at 360.907 kb on + strand, within MMP_RS01945at 360.992 kb on + strand, within MMP_RS01945at 360.995 kb on - strand, within MMP_RS01945at 360.996 kb on + strand, within MMP_RS01945at 361.013 kb on - strand, within MMP_RS01945at 361.015 kb on - strand, within MMP_RS01945at 361.045 kb on - strand, within MMP_RS01945at 361.274 kb on + strand, within MMP_RS01945at 361.282 kb on - strand, within MMP_RS01945at 361.291 kb on - strand, within MMP_RS01945at 361.292 kb on + strand, within MMP_RS01945at 361.294 kb on + strand, within MMP_RS01945at 361.294 kb on + strand, within MMP_RS01945

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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358,618 - MMP_RS01935 0.28 +0.6
358,621 - MMP_RS01935 0.28 +0.4
358,665 + MMP_RS01935 0.32 +0.3
358,670 + MMP_RS01935 0.32 +1.1
358,678 - MMP_RS01935 0.33 +1.3
358,679 + MMP_RS01935 0.33 +0.0
358,725 + MMP_RS01935 0.36 +0.5
358,725 + MMP_RS01935 0.36 +0.6
358,782 - MMP_RS01935 0.41 +0.3
358,783 + MMP_RS01935 0.41 +0.2
358,785 - MMP_RS01935 0.41 -0.3
358,785 - MMP_RS01935 0.41 +0.3
358,785 - MMP_RS01935 0.41 +0.1
358,786 + MMP_RS01935 0.41 +0.4
358,786 + MMP_RS01935 0.41 -1.8
358,787 - MMP_RS01935 0.41 +0.6
358,788 + MMP_RS01935 0.41 +0.4
358,811 - MMP_RS01935 0.43 -0.6
358,816 + MMP_RS01935 0.43 +0.2
358,816 + MMP_RS01935 0.43 +0.3
358,862 + MMP_RS01935 0.47 -0.0
358,864 - MMP_RS01935 0.47 -0.5
358,865 + MMP_RS01935 0.47 +0.2
358,957 - MMP_RS01935 0.54 -0.3
358,992 + MMP_RS01935 0.57 +0.1
358,992 + MMP_RS01935 0.57 -0.5
359,090 + MMP_RS01935 0.64 +0.0
359,117 + MMP_RS01935 0.66 -0.6
359,174 - MMP_RS01935 0.71 -0.1
359,174 - MMP_RS01935 0.71 +0.0
359,195 - MMP_RS01935 0.72 +0.6
359,445 + -0.6
359,445 + -0.2
359,446 - +0.1
359,446 - +0.0
359,446 - -0.1
359,447 + +0.8
359,483 - +0.0
359,483 - +0.3
359,486 + +0.2
359,529 - +0.6
359,529 - -0.1
359,529 - +0.1
359,591 + +0.3
359,662 - MMP_RS01940 0.11 +0.7
359,712 - MMP_RS01940 0.16 +0.7
359,789 - MMP_RS01940 0.25 +0.6
360,037 + MMP_RS01940 0.51 -0.4
360,099 + MMP_RS01940 0.57 +0.1
360,176 + MMP_RS01940 0.66 +0.7
360,180 + MMP_RS01940 0.66 +0.1
360,458 - -0.2
360,480 + +0.8
360,513 - +0.4
360,514 + -0.1
360,518 - +1.3
360,612 + MMP_RS01945 0.14 -0.1
360,649 + MMP_RS01945 0.18 -0.0
360,743 - MMP_RS01945 0.27 +0.4
360,884 - MMP_RS01945 0.41 -0.2
360,885 + MMP_RS01945 0.41 +0.3
360,901 - MMP_RS01945 0.43 -0.9
360,906 - MMP_RS01945 0.43 +0.9
360,907 + MMP_RS01945 0.43 +1.2
360,992 + MMP_RS01945 0.52 -0.1
360,995 - MMP_RS01945 0.52 +0.3
360,996 + MMP_RS01945 0.52 +1.3
361,013 - MMP_RS01945 0.54 -0.5
361,015 - MMP_RS01945 0.54 +0.1
361,045 - MMP_RS01945 0.57 +0.3
361,274 + MMP_RS01945 0.80 -0.0
361,282 - MMP_RS01945 0.81 +0.4
361,291 - MMP_RS01945 0.82 +0.2
361,292 + MMP_RS01945 0.82 -0.1
361,294 + MMP_RS01945 0.82 +1.6
361,294 + MMP_RS01945 0.82 +0.4

Or see this region's nucleotide sequence