Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01365 and MMP_RS01370 are separated by 531 nucleotides MMP_RS01370 and MMP_RS01375 are separated by 142 nucleotides
MMP_RS01365: MMP_RS01365 - archaeal proteasome endopeptidase complex subunit alpha, at 252,275 to 253,054
_RS01365
MMP_RS01370: MMP_RS01370 - acetate--CoA ligase family protein, at 253,586 to 255,694
_RS01370
MMP_RS01375: MMP_RS01375 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 255,837 to 257,360
_RS01375
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.681 kb on - strand, within MMP_RS01365 at 252.681 kb on - strand, within MMP_RS01365 at 253.056 kb on - strand at 253.056 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.082 kb on + strand at 253.108 kb on - strand at 253.108 kb on - strand at 253.109 kb on + strand at 253.109 kb on + strand at 253.115 kb on - strand at 253.133 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.140 kb on + strand at 253.140 kb on + strand at 253.140 kb on + strand at 253.175 kb on - strand at 253.176 kb on + strand at 253.176 kb on + strand at 253.178 kb on + strand at 253.186 kb on + strand at 253.200 kb on - strand at 253.210 kb on - strand at 253.216 kb on - strand at 253.226 kb on - strand at 253.451 kb on + strand at 253.452 kb on - strand at 253.455 kb on + strand at 253.455 kb on + strand at 253.455 kb on + strand at 253.526 kb on - strand at 253.580 kb on + strand at 253.595 kb on - strand at 253.595 kb on - strand at 253.597 kb on - strand at 253.597 kb on - strand at 253.598 kb on + strand at 253.602 kb on + strand at 253.741 kb on - strand at 254.087 kb on - strand, within MMP_RS01370 at 254.088 kb on + strand, within MMP_RS01370 at 254.089 kb on - strand, within MMP_RS01370 at 254.089 kb on - strand, within MMP_RS01370 at 254.143 kb on - strand, within MMP_RS01370 at 254.156 kb on + strand, within MMP_RS01370 at 254.161 kb on - strand, within MMP_RS01370 at 254.162 kb on + strand, within MMP_RS01370 at 254.485 kb on - strand, within MMP_RS01370 at 254.496 kb on - strand, within MMP_RS01370 at 254.562 kb on + strand, within MMP_RS01370 at 254.579 kb on - strand, within MMP_RS01370 at 254.579 kb on - strand, within MMP_RS01370 at 254.601 kb on + strand, within MMP_RS01370 at 254.624 kb on + strand, within MMP_RS01370 at 254.624 kb on + strand, within MMP_RS01370 at 254.850 kb on + strand, within MMP_RS01370 at 254.910 kb on + strand, within MMP_RS01370 at 254.910 kb on + strand, within MMP_RS01370 at 254.994 kb on + strand, within MMP_RS01370 at 255.099 kb on - strand, within MMP_RS01370 at 255.099 kb on - strand, within MMP_RS01370 at 255.099 kb on - strand, within MMP_RS01370 at 255.172 kb on + strand, within MMP_RS01370 at 255.449 kb on - strand, within MMP_RS01370 at 255.475 kb on - strand, within MMP_RS01370 at 255.479 kb on - strand, within MMP_RS01370 at 255.547 kb on + strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.695 kb on + strand at 255.695 kb on + strand at 255.695 kb on + strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.698 kb on - strand at 255.715 kb on - strand at 255.715 kb on - strand at 255.716 kb on + strand at 255.733 kb on - strand at 255.733 kb on - strand at 255.739 kb on - strand at 255.740 kb on + strand at 255.749 kb on - strand at 255.756 kb on + strand at 255.759 kb on - strand at 255.759 kb on - strand at 255.776 kb on + strand at 255.779 kb on + strand at 255.779 kb on + strand at 255.780 kb on - strand at 255.780 kb on - strand at 255.785 kb on + strand at 256.172 kb on + strand, within MMP_RS01375 at 256.200 kb on + strand, within MMP_RS01375 at 256.322 kb on - strand, within MMP_RS01375 at 256.358 kb on - strand, within MMP_RS01375 at 256.402 kb on - strand, within MMP_RS01375 at 256.418 kb on - strand, within MMP_RS01375 at 256.419 kb on + strand, within MMP_RS01375 at 256.450 kb on - strand, within MMP_RS01375 at 256.451 kb on + strand, within MMP_RS01375 at 256.455 kb on + strand, within MMP_RS01375 at 256.455 kb on + strand, within MMP_RS01375 at 256.490 kb on - strand, within MMP_RS01375 at 256.492 kb on - strand, within MMP_RS01375 at 256.493 kb on + strand, within MMP_RS01375 at 256.561 kb on + strand, within MMP_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 252,681 - MMP_RS01365 0.52 -1.7 252,681 - MMP_RS01365 0.52 -1.3 253,056 - -1.8 253,056 - -1.2 253,057 + -1.8 253,057 + -1.6 253,082 + -1.2 253,108 - -0.4 253,108 - -0.9 253,109 + -0.8 253,109 + +0.5 253,115 - -0.4 253,133 - -1.1 253,137 - -0.9 253,137 - +0.5 253,137 - +0.4 253,137 - -0.2 253,138 + -1.1 253,138 + -0.3 253,138 + -0.8 253,138 + +0.2 253,138 + -0.8 253,138 + -0.5 253,139 - -0.1 253,139 - -0.1 253,139 - -0.4 253,139 - -0.8 253,139 - -0.5 253,140 + -0.5 253,140 + -0.5 253,140 + -0.8 253,175 - -0.4 253,176 + -0.1 253,176 + +0.2 253,178 + -0.6 253,186 + +0.0 253,200 - -0.3 253,210 - +0.2 253,216 - -0.2 253,226 - -0.1 253,451 + +0.2 253,452 - -0.1 253,455 + +0.4 253,455 + +0.4 253,455 + +0.0 253,526 - +1.2 253,580 + +0.4 253,595 - +0.6 253,595 - +0.9 253,597 - +0.3 253,597 - +0.9 253,598 + +0.2 253,602 + +1.2 253,741 - +0.7 254,087 - MMP_RS01370 0.24 +0.7 254,088 + MMP_RS01370 0.24 +0.9 254,089 - MMP_RS01370 0.24 +1.7 254,089 - MMP_RS01370 0.24 +0.7 254,143 - MMP_RS01370 0.26 +0.8 254,156 + MMP_RS01370 0.27 +1.5 254,161 - MMP_RS01370 0.27 +1.1 254,162 + MMP_RS01370 0.27 +1.4 254,485 - MMP_RS01370 0.43 +0.5 254,496 - MMP_RS01370 0.43 +0.6 254,562 + MMP_RS01370 0.46 +0.7 254,579 - MMP_RS01370 0.47 +1.0 254,579 - MMP_RS01370 0.47 +0.8 254,601 + MMP_RS01370 0.48 +0.5 254,624 + MMP_RS01370 0.49 +0.4 254,624 + MMP_RS01370 0.49 +1.4 254,850 + MMP_RS01370 0.60 +0.7 254,910 + MMP_RS01370 0.63 +0.7 254,910 + MMP_RS01370 0.63 +1.4 254,994 + MMP_RS01370 0.67 +0.7 255,099 - MMP_RS01370 0.72 +0.7 255,099 - MMP_RS01370 0.72 +0.3 255,099 - MMP_RS01370 0.72 +1.4 255,172 + MMP_RS01370 0.75 +1.1 255,449 - MMP_RS01370 0.88 -0.1 255,475 - MMP_RS01370 0.90 +1.5 255,479 - MMP_RS01370 0.90 +0.9 255,547 + +0.6 255,694 - +1.0 255,694 - +1.2 255,694 - +1.1 255,694 - +0.2 255,694 - +1.4 255,695 + +1.1 255,695 + +1.0 255,695 + +0.7 255,696 - +1.1 255,696 - +1.1 255,696 - +1.1 255,696 - +1.2 255,696 - -0.4 255,696 - +1.2 255,696 - +0.7 255,696 - +1.6 255,696 - +1.6 255,697 + +0.8 255,697 + +0.7 255,697 + +1.9 255,697 + +0.7 255,697 + +1.3 255,697 + +1.8 255,697 + +0.9 255,697 + +1.4 255,697 + +2.0 255,697 + +1.1 255,698 - +0.8 255,715 - +1.4 255,715 - +0.4 255,716 + +2.0 255,733 - +0.8 255,733 - +1.7 255,739 - +0.9 255,740 + +1.6 255,749 - +1.1 255,756 + +1.8 255,759 - +0.9 255,759 - +1.0 255,776 + +1.3 255,779 + +0.6 255,779 + +0.5 255,780 - +0.5 255,780 - +1.1 255,785 + +1.3 256,172 + MMP_RS01375 0.22 -0.2 256,200 + MMP_RS01375 0.24 +0.0 256,322 - MMP_RS01375 0.32 -0.2 256,358 - MMP_RS01375 0.34 -0.5 256,402 - MMP_RS01375 0.37 +0.1 256,418 - MMP_RS01375 0.38 -0.5 256,419 + MMP_RS01375 0.38 +0.1 256,450 - MMP_RS01375 0.40 +0.2 256,451 + MMP_RS01375 0.40 +0.7 256,455 + MMP_RS01375 0.41 -0.3 256,455 + MMP_RS01375 0.41 -0.1 256,490 - MMP_RS01375 0.43 -0.3 256,492 - MMP_RS01375 0.43 -0.3 256,493 + MMP_RS01375 0.43 +0.4 256,561 + MMP_RS01375 0.48 -0.0
Or see this region's nucleotide sequence