Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01255 and MMP_RS01260 are separated by 40 nucleotides MMP_RS01260 and MMP_RS01265 are separated by 81 nucleotides MMP_RS01265 and MMP_RS01270 are separated by 14 nucleotides
MMP_RS01255: MMP_RS01255 - amino acid ABC transporter ATP-binding protein, at 238,007 to 238,738
_RS01255
MMP_RS01260: MMP_RS01260 - HDIG domain-containing protein, at 238,779 to 239,465
_RS01260
MMP_RS01265: MMP_RS01265 - hypothetical protein, at 239,547 to 239,915
_RS01265
MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970
_RS01270
Position (kb) 239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 238.646 kb on - strand, within MMP_RS01255 at 239.228 kb on + strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.394 kb on - strand, within MMP_RS01260 at 239.397 kb on + strand at 239.454 kb on - strand at 239.454 kb on - strand at 239.482 kb on - strand at 239.482 kb on - strand at 239.483 kb on + strand at 239.485 kb on + strand at 239.486 kb on - strand at 239.499 kb on + strand at 239.512 kb on + strand at 239.544 kb on - strand at 239.544 kb on - strand at 239.546 kb on - strand at 239.546 kb on - strand at 239.546 kb on - strand at 239.547 kb on + strand at 239.804 kb on - strand, within MMP_RS01265 at 239.808 kb on + strand, within MMP_RS01265 at 239.868 kb on + strand, within MMP_RS01265 at 239.869 kb on - strand, within MMP_RS01265 at 239.999 kb on - strand at 240.000 kb on + strand at 240.001 kb on - strand at 240.001 kb on - strand at 240.052 kb on + strand, within MMP_RS01270 at 240.132 kb on - strand, within MMP_RS01270 at 240.166 kb on - strand, within MMP_RS01270 at 240.167 kb on + strand, within MMP_RS01270 at 240.175 kb on - strand, within MMP_RS01270 at 240.208 kb on - strand, within MMP_RS01270 at 240.208 kb on - strand, within MMP_RS01270 at 240.208 kb on - strand, within MMP_RS01270 at 240.209 kb on + strand, within MMP_RS01270 at 240.212 kb on - strand, within MMP_RS01270 at 240.213 kb on + strand, within MMP_RS01270 at 240.213 kb on + strand, within MMP_RS01270 at 240.249 kb on - strand, within MMP_RS01270 at 240.250 kb on + strand, within MMP_RS01270 at 240.311 kb on + strand, within MMP_RS01270 at 240.354 kb on - strand, within MMP_RS01270 at 240.400 kb on + strand, within MMP_RS01270 at 240.415 kb on + strand, within MMP_RS01270 at 240.482 kb on + strand, within MMP_RS01270 at 240.484 kb on - strand, within MMP_RS01270 at 240.510 kb on + strand, within MMP_RS01270 at 240.514 kb on + strand, within MMP_RS01270 at 240.566 kb on - strand, within MMP_RS01270 at 240.601 kb on + strand, within MMP_RS01270 at 240.666 kb on - strand, within MMP_RS01270 at 240.683 kb on + strand, within MMP_RS01270 at 240.688 kb on + strand, within MMP_RS01270 at 240.705 kb on - strand, within MMP_RS01270 at 240.724 kb on - strand, within MMP_RS01270 at 240.884 kb on + strand at 240.884 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 238,646 - MMP_RS01255 0.87 +0.3 239,228 + MMP_RS01260 0.65 +0.1 239,394 - MMP_RS01260 0.90 +0.4 239,394 - MMP_RS01260 0.90 +0.1 239,394 - MMP_RS01260 0.90 -0.2 239,397 + -0.8 239,454 - +0.2 239,454 - +0.2 239,482 - +0.3 239,482 - +0.4 239,483 + +0.1 239,485 + +0.3 239,486 - -0.8 239,499 + +0.3 239,512 + +0.2 239,544 - -1.2 239,544 - -2.9 239,546 - -1.3 239,546 - -2.7 239,546 - -1.7 239,547 + -1.0 239,804 - MMP_RS01265 0.70 -2.2 239,808 + MMP_RS01265 0.71 -3.9 239,868 + MMP_RS01265 0.87 -2.5 239,869 - MMP_RS01265 0.87 -0.6 239,999 - +0.2 240,000 + +0.1 240,001 - +0.1 240,001 - -0.1 240,052 + MMP_RS01270 0.12 +0.3 240,132 - MMP_RS01270 0.19 +0.1 240,166 - MMP_RS01270 0.23 +0.3 240,167 + MMP_RS01270 0.23 +0.0 240,175 - MMP_RS01270 0.24 +0.5 240,208 - MMP_RS01270 0.27 +0.2 240,208 - MMP_RS01270 0.27 +0.6 240,208 - MMP_RS01270 0.27 +0.2 240,209 + MMP_RS01270 0.27 +0.4 240,212 - MMP_RS01270 0.27 +0.1 240,213 + MMP_RS01270 0.27 +0.2 240,213 + MMP_RS01270 0.27 +0.2 240,249 - MMP_RS01270 0.31 +0.2 240,250 + MMP_RS01270 0.31 +0.1 240,311 + MMP_RS01270 0.37 +0.1 240,354 - MMP_RS01270 0.41 +0.4 240,400 + MMP_RS01270 0.45 +0.2 240,415 + MMP_RS01270 0.47 +0.7 240,482 + MMP_RS01270 0.53 +0.8 240,484 - MMP_RS01270 0.53 +0.1 240,510 + MMP_RS01270 0.56 +0.5 240,514 + MMP_RS01270 0.56 +0.4 240,566 - MMP_RS01270 0.61 -0.3 240,601 + MMP_RS01270 0.64 +0.5 240,666 - MMP_RS01270 0.71 +0.2 240,683 + MMP_RS01270 0.72 +0.3 240,688 + MMP_RS01270 0.73 +0.6 240,705 - MMP_RS01270 0.74 +0.3 240,724 - MMP_RS01270 0.76 +0.9 240,884 + -0.1 240,884 + -0.2
Or see this region's nucleotide sequence