Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01165

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01160 and MMP_RS01165 are separated by 95 nucleotidesMMP_RS01165 and MMP_RS01170 are separated by 1 nucleotides MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150 _RS01160 MMP_RS01165: MMP_RS01165 - DUF434 domain-containing protein, at 218,246 to 218,914 _RS01165 MMP_RS01170: MMP_RS01170 - glycine--tRNA ligase, at 218,916 to 220,640 _RS01170 Position (kb) 218 219Strain fitness (log2 ratio) -1 0 1at 217.379 kb on + strand, within MMP_RS01160at 217.391 kb on + strand, within MMP_RS01160at 217.408 kb on - strand, within MMP_RS01160at 217.464 kb on - strand, within MMP_RS01160at 217.464 kb on - strand, within MMP_RS01160at 217.504 kb on + strand, within MMP_RS01160at 217.860 kb on - strand, within MMP_RS01160at 217.860 kb on - strand, within MMP_RS01160at 217.860 kb on - strand, within MMP_RS01160at 217.861 kb on + strand, within MMP_RS01160at 217.929 kb on - strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 218.121 kb on - strandat 218.122 kb on + strandat 218.456 kb on + strand, within MMP_RS01165at 218.734 kb on - strand, within MMP_RS01165at 218.764 kb on - strand, within MMP_RS01165at 218.806 kb on - strand, within MMP_RS01165at 218.806 kb on - strand, within MMP_RS01165at 218.830 kb on - strand, within MMP_RS01165at 218.858 kb on + strandat 219.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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217,379 + MMP_RS01160 0.14 -0.3
217,391 + MMP_RS01160 0.16 -0.0
217,408 - MMP_RS01160 0.17 +0.3
217,464 - MMP_RS01160 0.24 -0.5
217,464 - MMP_RS01160 0.24 +0.0
217,504 + MMP_RS01160 0.28 -0.3
217,860 - MMP_RS01160 0.68 -0.2
217,860 - MMP_RS01160 0.68 +0.1
217,860 - MMP_RS01160 0.68 +0.4
217,861 + MMP_RS01160 0.68 +0.5
217,929 - MMP_RS01160 0.75 +0.2
217,930 + MMP_RS01160 0.75 -0.3
217,930 + MMP_RS01160 0.75 +0.1
217,930 + MMP_RS01160 0.75 -0.1
217,930 + MMP_RS01160 0.75 +0.8
218,121 - +0.7
218,122 + -0.2
218,456 + MMP_RS01165 0.31 +0.3
218,734 - MMP_RS01165 0.73 +0.3
218,764 - MMP_RS01165 0.77 -0.1
218,806 - MMP_RS01165 0.84 +1.0
218,806 - MMP_RS01165 0.84 +0.5
218,830 - MMP_RS01165 0.87 +0.3
218,858 + +0.3
219,809 + -1.7

Or see this region's nucleotide sequence