Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01140

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01135 and MMP_RS01140 are separated by 9 nucleotidesMMP_RS01140 and MMP_RS01145 are separated by 9 nucleotides MMP_RS01135: MMP_RS01135 - molybdate ABC transporter substrate-binding protein, at 212,528 to 213,331 _RS01135 MMP_RS01140: MMP_RS01140 - molybdate ABC transporter permease subunit, at 213,341 to 214,006 _RS01140 MMP_RS01145: MMP_RS01145 - ABC transporter ATP-binding protein, at 214,016 to 215,158 _RS01145 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1at 212.454 kb on - strandat 212.454 kb on - strandat 212.454 kb on - strandat 212.457 kb on + strandat 212.457 kb on + strandat 212.512 kb on + strandat 212.512 kb on + strandat 212.512 kb on + strandat 212.514 kb on + strandat 212.551 kb on + strandat 212.812 kb on - strand, within MMP_RS01135at 212.823 kb on - strand, within MMP_RS01135at 212.830 kb on + strand, within MMP_RS01135at 212.830 kb on + strand, within MMP_RS01135at 212.830 kb on + strand, within MMP_RS01135at 212.926 kb on - strand, within MMP_RS01135at 212.927 kb on + strand, within MMP_RS01135at 212.927 kb on + strand, within MMP_RS01135at 212.944 kb on + strand, within MMP_RS01135at 212.977 kb on - strand, within MMP_RS01135at 213.129 kb on - strand, within MMP_RS01135at 213.132 kb on + strand, within MMP_RS01135at 213.132 kb on + strand, within MMP_RS01135at 213.132 kb on + strand, within MMP_RS01135at 213.175 kb on - strand, within MMP_RS01135at 213.176 kb on + strand, within MMP_RS01135at 213.176 kb on + strand, within MMP_RS01135at 213.177 kb on - strand, within MMP_RS01135at 213.177 kb on - strand, within MMP_RS01135at 213.178 kb on + strand, within MMP_RS01135at 213.206 kb on + strand, within MMP_RS01135at 213.206 kb on + strand, within MMP_RS01135at 213.217 kb on + strand, within MMP_RS01135at 213.217 kb on + strand, within MMP_RS01135at 213.220 kb on - strand, within MMP_RS01135at 213.220 kb on - strand, within MMP_RS01135at 213.269 kb on - strandat 213.270 kb on + strandat 213.336 kb on + strandat 213.354 kb on - strandat 213.355 kb on + strandat 213.355 kb on + strandat 213.366 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.388 kb on - strandat 213.390 kb on - strandat 213.395 kb on + strandat 213.395 kb on + strandat 213.395 kb on + strandat 213.480 kb on - strand, within MMP_RS01140at 213.480 kb on - strand, within MMP_RS01140at 213.597 kb on - strand, within MMP_RS01140at 213.934 kb on + strand, within MMP_RS01140at 213.949 kb on + strandat 214.004 kb on - strandat 214.016 kb on + strandat 214.114 kb on + strandat 214.262 kb on + strand, within MMP_RS01145at 214.305 kb on + strand, within MMP_RS01145at 214.408 kb on + strand, within MMP_RS01145at 214.474 kb on + strand, within MMP_RS01145at 214.782 kb on - strand, within MMP_RS01145at 214.782 kb on - strand, within MMP_RS01145at 214.903 kb on + strand, within MMP_RS01145at 214.911 kb on - strand, within MMP_RS01145at 214.911 kb on - strand, within MMP_RS01145at 214.916 kb on + strand, within MMP_RS01145at 214.917 kb on - strand, within MMP_RS01145at 214.965 kb on - strand, within MMP_RS01145at 214.965 kb on - strand, within MMP_RS01145at 214.966 kb on + strand, within MMP_RS01145

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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212,454 - -2.1
212,454 - -0.1
212,454 - +0.8
212,457 + +0.6
212,457 + +0.1
212,512 + +0.4
212,512 + +0.0
212,512 + -0.2
212,514 + -0.1
212,551 + +0.2
212,812 - MMP_RS01135 0.35 +0.1
212,823 - MMP_RS01135 0.37 +0.3
212,830 + MMP_RS01135 0.38 -0.1
212,830 + MMP_RS01135 0.38 -0.1
212,830 + MMP_RS01135 0.38 +0.0
212,926 - MMP_RS01135 0.50 -0.2
212,927 + MMP_RS01135 0.50 -0.3
212,927 + MMP_RS01135 0.50 +0.1
212,944 + MMP_RS01135 0.52 -0.2
212,977 - MMP_RS01135 0.56 -0.0
213,129 - MMP_RS01135 0.75 -0.1
213,132 + MMP_RS01135 0.75 -0.8
213,132 + MMP_RS01135 0.75 +0.1
213,132 + MMP_RS01135 0.75 -0.1
213,175 - MMP_RS01135 0.80 -0.5
213,176 + MMP_RS01135 0.81 +0.1
213,176 + MMP_RS01135 0.81 -0.3
213,177 - MMP_RS01135 0.81 -0.2
213,177 - MMP_RS01135 0.81 +0.5
213,178 + MMP_RS01135 0.81 +0.2
213,206 + MMP_RS01135 0.84 +0.1
213,206 + MMP_RS01135 0.84 -0.0
213,217 + MMP_RS01135 0.86 -0.0
213,217 + MMP_RS01135 0.86 +0.1
213,220 - MMP_RS01135 0.86 -0.1
213,220 - MMP_RS01135 0.86 +0.1
213,269 - -0.1
213,270 + +0.1
213,336 + +0.4
213,354 - +1.3
213,355 + -0.1
213,355 + -0.2
213,366 - -0.3
213,370 - +0.4
213,370 - +0.4
213,370 - +0.1
213,370 - -0.3
213,370 - -0.1
213,388 - +1.0
213,390 - -0.4
213,395 + +0.7
213,395 + +0.3
213,395 + +0.2
213,480 - MMP_RS01140 0.21 +0.6
213,480 - MMP_RS01140 0.21 +0.4
213,597 - MMP_RS01140 0.38 +0.0
213,934 + MMP_RS01140 0.89 +0.0
213,949 + +0.4
214,004 - +0.1
214,016 + +0.1
214,114 + -0.3
214,262 + MMP_RS01145 0.22 -0.1
214,305 + MMP_RS01145 0.25 +0.1
214,408 + MMP_RS01145 0.34 +0.7
214,474 + MMP_RS01145 0.40 +0.0
214,782 - MMP_RS01145 0.67 +0.2
214,782 - MMP_RS01145 0.67 +0.1
214,903 + MMP_RS01145 0.78 +0.5
214,911 - MMP_RS01145 0.78 -0.0
214,911 - MMP_RS01145 0.78 +0.2
214,916 + MMP_RS01145 0.79 +0.5
214,917 - MMP_RS01145 0.79 -0.0
214,965 - MMP_RS01145 0.83 -0.1
214,965 - MMP_RS01145 0.83 +0.1
214,966 + MMP_RS01145 0.83 +0.4

Or see this region's nucleotide sequence