Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00935 and MMP_RS00940 are separated by 0 nucleotides MMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides MMP_RS00945 and MMP_RS00950 are separated by 112 nucleotides
MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830
_RS00935
MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799
_RS00940
MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259
_RS00945
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1 at 174.931 kb on - strand, within MMP_RS00935 at 175.267 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.274 kb on - strand, within MMP_RS00935 at 175.324 kb on + strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.342 kb on + strand, within MMP_RS00935 at 175.390 kb on - strand, within MMP_RS00935 at 175.391 kb on + strand, within MMP_RS00935 at 175.394 kb on + strand, within MMP_RS00935 at 175.531 kb on - strand, within MMP_RS00935 at 175.552 kb on + strand, within MMP_RS00935 at 175.552 kb on + strand, within MMP_RS00935 at 175.774 kb on - strand at 176.026 kb on + strand, within MMP_RS00940 at 176.028 kb on + strand, within MMP_RS00940 at 176.052 kb on - strand, within MMP_RS00940 at 176.220 kb on + strand, within MMP_RS00940 at 176.292 kb on - strand, within MMP_RS00940 at 176.412 kb on - strand, within MMP_RS00940 at 176.429 kb on + strand, within MMP_RS00940 at 176.435 kb on + strand, within MMP_RS00940 at 176.460 kb on - strand, within MMP_RS00940 at 176.652 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.657 kb on + strand, within MMP_RS00940 at 176.743 kb on - strand at 176.749 kb on - strand at 176.750 kb on + strand at 176.757 kb on - strand at 176.834 kb on + strand at 177.212 kb on - strand, within MMP_RS00945 at 177.239 kb on - strand at 177.247 kb on - strand at 177.317 kb on - strand at 177.353 kb on - strand at 177.354 kb on + strand at 177.737 kb on + strand, within MMP_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 174,931 - MMP_RS00935 0.35 +0.6 175,267 - MMP_RS00935 0.59 +0.3 175,270 - MMP_RS00935 0.59 +0.3 175,270 - MMP_RS00935 0.59 +0.4 175,274 - MMP_RS00935 0.60 -0.1 175,324 + MMP_RS00935 0.63 +0.2 175,328 - MMP_RS00935 0.64 +0.1 175,328 - MMP_RS00935 0.64 -0.4 175,328 - MMP_RS00935 0.64 -0.6 175,329 + MMP_RS00935 0.64 +0.1 175,329 + MMP_RS00935 0.64 +0.1 175,341 - MMP_RS00935 0.65 +1.2 175,341 - MMP_RS00935 0.65 -0.1 175,341 - MMP_RS00935 0.65 -0.8 175,342 + MMP_RS00935 0.65 +0.2 175,390 - MMP_RS00935 0.68 +0.1 175,391 + MMP_RS00935 0.68 +0.5 175,394 + MMP_RS00935 0.68 -0.2 175,531 - MMP_RS00935 0.78 -0.1 175,552 + MMP_RS00935 0.80 -0.1 175,552 + MMP_RS00935 0.80 +0.4 175,774 - -0.0 176,026 + MMP_RS00940 0.20 -0.2 176,028 + MMP_RS00940 0.20 +0.0 176,052 - MMP_RS00940 0.23 +0.5 176,220 + MMP_RS00940 0.40 +0.5 176,292 - MMP_RS00940 0.48 -0.0 176,412 - MMP_RS00940 0.60 +0.1 176,429 + MMP_RS00940 0.62 +0.5 176,435 + MMP_RS00940 0.62 +0.4 176,460 - MMP_RS00940 0.65 +0.3 176,652 - MMP_RS00940 0.85 +0.4 176,656 - MMP_RS00940 0.85 -0.1 176,656 - MMP_RS00940 0.85 +0.4 176,657 + MMP_RS00940 0.85 +0.3 176,743 - +0.8 176,749 - -0.0 176,750 + +0.1 176,757 - +0.0 176,834 + -0.3 177,212 - MMP_RS00945 0.90 +0.4 177,239 - +0.5 177,247 - +0.1 177,317 - +0.1 177,353 - +0.5 177,354 + -0.1 177,737 + MMP_RS00950 0.32 -0.3
Or see this region's nucleotide sequence