Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00920 and MMP_RS00925 are separated by 47 nucleotides MMP_RS00925 and MMP_RS00930 are separated by 90 nucleotides MMP_RS00930 and MMP_RS00935 are separated by 9 nucleotides
MMP_RS00920: MMP_RS00920 - TRC40/GET3/ArsA family transport-energizing ATPase, at 172,067 to 173,104
_RS00920
MMP_RS00925: MMP_RS00925 - sirohydrochlorin nickelochelatase, at 173,152 to 173,586
_RS00925
MMP_RS00930: MMP_RS00930 - ABC transporter permease, at 173,677 to 174,438
_RS00930
MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830
_RS00935
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1 at 173.068 kb on - strand at 173.098 kb on + strand at 173.179 kb on - strand at 173.179 kb on - strand at 173.224 kb on - strand at 173.225 kb on + strand at 173.449 kb on + strand at 173.652 kb on + strand at 173.652 kb on + strand at 173.656 kb on + strand at 173.705 kb on - strand at 173.713 kb on - strand at 173.788 kb on - strand, within MMP_RS00930 at 173.816 kb on - strand, within MMP_RS00930 at 173.816 kb on - strand, within MMP_RS00930 at 173.817 kb on + strand, within MMP_RS00930 at 173.817 kb on + strand, within MMP_RS00930 at 173.832 kb on - strand, within MMP_RS00930 at 173.834 kb on - strand, within MMP_RS00930 at 173.911 kb on - strand, within MMP_RS00930 at 174.257 kb on - strand, within MMP_RS00930 at 174.450 kb on + strand at 174.486 kb on - strand at 174.504 kb on + strand at 174.504 kb on + strand at 174.526 kb on + strand at 174.589 kb on - strand, within MMP_RS00935 at 174.603 kb on - strand, within MMP_RS00935 at 174.769 kb on + strand, within MMP_RS00935 at 174.797 kb on + strand, within MMP_RS00935 at 174.804 kb on - strand, within MMP_RS00935 at 174.931 kb on - strand, within MMP_RS00935 at 175.267 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.274 kb on - strand, within MMP_RS00935 at 175.324 kb on + strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.342 kb on + strand, within MMP_RS00935 at 175.390 kb on - strand, within MMP_RS00935 at 175.391 kb on + strand, within MMP_RS00935 at 175.394 kb on + strand, within MMP_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 173,068 - -0.6 173,098 + -2.1 173,179 - -0.8 173,179 - -0.7 173,224 - -1.1 173,225 + -0.2 173,449 + -1.1 173,652 + -0.4 173,652 + -0.6 173,656 + +0.1 173,705 - +0.3 173,713 - -0.2 173,788 - MMP_RS00930 0.15 +0.3 173,816 - MMP_RS00930 0.18 -0.4 173,816 - MMP_RS00930 0.18 +0.5 173,817 + MMP_RS00930 0.18 +0.5 173,817 + MMP_RS00930 0.18 +0.5 173,832 - MMP_RS00930 0.20 -0.2 173,834 - MMP_RS00930 0.21 -0.1 173,911 - MMP_RS00930 0.31 +0.8 174,257 - MMP_RS00930 0.76 +0.0 174,450 + -0.1 174,486 - -0.3 174,504 + +0.2 174,504 + -0.0 174,526 + +0.2 174,589 - MMP_RS00935 0.10 +0.3 174,603 - MMP_RS00935 0.11 +1.1 174,769 + MMP_RS00935 0.23 +0.9 174,797 + MMP_RS00935 0.25 -0.6 174,804 - MMP_RS00935 0.26 -0.1 174,931 - MMP_RS00935 0.35 +0.6 175,267 - MMP_RS00935 0.59 +0.3 175,270 - MMP_RS00935 0.59 +0.3 175,270 - MMP_RS00935 0.59 +0.4 175,274 - MMP_RS00935 0.60 -0.1 175,324 + MMP_RS00935 0.63 +0.2 175,328 - MMP_RS00935 0.64 +0.1 175,328 - MMP_RS00935 0.64 -0.4 175,328 - MMP_RS00935 0.64 -0.6 175,329 + MMP_RS00935 0.64 +0.1 175,329 + MMP_RS00935 0.64 +0.1 175,341 - MMP_RS00935 0.65 +1.2 175,341 - MMP_RS00935 0.65 -0.1 175,341 - MMP_RS00935 0.65 -0.8 175,342 + MMP_RS00935 0.65 +0.2 175,390 - MMP_RS00935 0.68 +0.1 175,391 + MMP_RS00935 0.68 +0.5 175,394 + MMP_RS00935 0.68 -0.2
Or see this region's nucleotide sequence