Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00795 and MMP_RS00800 are separated by 23 nucleotides MMP_RS00800 and MMP_RS00805 are separated by 48 nucleotides
MMP_RS00795: MMP_RS00795 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 145,038 to 147,068
_RS00795
MMP_RS00800: MMP_RS00800 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 147,092 to 148,219
_RS00800
MMP_RS00805: MMP_RS00805 - carbamoyltransferase HypF, at 148,268 to 150,583
_RS00805
Position (kb) 147
148
149 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 146.097 kb on - strand, within MMP_RS00795 at 146.135 kb on + strand, within MMP_RS00795 at 146.242 kb on - strand, within MMP_RS00795 at 146.516 kb on + strand, within MMP_RS00795 at 146.731 kb on - strand, within MMP_RS00795 at 146.732 kb on + strand, within MMP_RS00795 at 146.735 kb on - strand, within MMP_RS00795 at 146.736 kb on + strand, within MMP_RS00795 at 146.795 kb on - strand, within MMP_RS00795 at 146.905 kb on - strand at 146.923 kb on - strand at 146.952 kb on - strand at 146.992 kb on - strand at 147.035 kb on + strand at 147.098 kb on - strand at 147.176 kb on - strand at 147.396 kb on - strand, within MMP_RS00800 at 147.440 kb on + strand, within MMP_RS00800 at 147.440 kb on + strand, within MMP_RS00800 at 147.440 kb on + strand, within MMP_RS00800 at 147.507 kb on + strand, within MMP_RS00800 at 147.528 kb on - strand, within MMP_RS00800 at 147.957 kb on - strand, within MMP_RS00800 at 147.957 kb on - strand, within MMP_RS00800 at 147.957 kb on - strand, within MMP_RS00800 at 147.958 kb on + strand, within MMP_RS00800 at 147.958 kb on + strand, within MMP_RS00800 at 147.966 kb on - strand, within MMP_RS00800 at 147.967 kb on + strand, within MMP_RS00800 at 148.001 kb on - strand, within MMP_RS00800 at 148.021 kb on + strand, within MMP_RS00800 at 148.104 kb on - strand, within MMP_RS00800 at 148.210 kb on + strand at 148.218 kb on + strand at 148.264 kb on - strand at 148.265 kb on + strand at 148.295 kb on + strand at 148.441 kb on - strand at 148.441 kb on - strand at 148.442 kb on + strand at 148.580 kb on - strand at 148.580 kb on - strand at 148.583 kb on - strand at 148.693 kb on + strand at 149.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 146,097 - MMP_RS00795 0.52 +0.3 146,135 + MMP_RS00795 0.54 +0.3 146,242 - MMP_RS00795 0.59 -0.0 146,516 + MMP_RS00795 0.73 -0.4 146,731 - MMP_RS00795 0.83 +0.4 146,732 + MMP_RS00795 0.83 +0.9 146,735 - MMP_RS00795 0.84 -0.0 146,736 + MMP_RS00795 0.84 -0.1 146,795 - MMP_RS00795 0.87 -0.5 146,905 - +0.5 146,923 - -0.2 146,952 - +0.0 146,992 - -0.4 147,035 + +0.5 147,098 - -0.1 147,176 - +0.0 147,396 - MMP_RS00800 0.27 -0.1 147,440 + MMP_RS00800 0.31 +0.2 147,440 + MMP_RS00800 0.31 +0.1 147,440 + MMP_RS00800 0.31 -0.1 147,507 + MMP_RS00800 0.37 +0.0 147,528 - MMP_RS00800 0.39 +0.2 147,957 - MMP_RS00800 0.77 +0.3 147,957 - MMP_RS00800 0.77 +0.3 147,957 - MMP_RS00800 0.77 +0.4 147,958 + MMP_RS00800 0.77 -0.1 147,958 + MMP_RS00800 0.77 +0.0 147,966 - MMP_RS00800 0.77 +0.2 147,967 + MMP_RS00800 0.78 +0.1 148,001 - MMP_RS00800 0.81 +0.2 148,021 + MMP_RS00800 0.82 +0.4 148,104 - MMP_RS00800 0.90 +0.5 148,210 + +0.1 148,218 + +0.1 148,264 - -0.2 148,265 + +0.3 148,295 + -1.8 148,441 - -3.0 148,441 - -1.9 148,442 + -2.0 148,580 - -2.5 148,580 - -1.1 148,583 - -4.8 148,693 + -2.1 149,177 - -1.3
Or see this region's nucleotide sequence