Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00450

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
87,821	-				-1.6
87,829	-				-1.4
87,832	-				-1.7
87,832	-				-1.5
87,833	+				-1.0
87,835	-				-1.6
87,836	+				-2.1
87,836	+				-0.7
87,837	-				-3.6
87,838	+				-1.3
87,838	+				-1.6
87,839	-				+0.4
87,839	-				-1.1
87,839	-				-0.7
87,839	-				-2.1
87,840	+				-0.5
87,840	+				-1.5
87,840	+				-1.5
87,840	+				-0.9
87,840	+				-1.6
87,847	-				-1.6
87,856	-				-0.9
87,856	-				-1.2
87,856	-				-1.6
87,856	-				-1.7
87,857	+				-1.2
87,857	+				-0.9
87,861	-				-0.8
87,878	-				-0.4
87,882	-				-1.1
87,882	-				-1.3
87,884	-				-0.5
87,884	-				-0.7
87,884	-				-0.4
87,884	-				-0.3
87,884	-				-0.3
87,885	+				-0.2
88,056	-		MMP_RS00445	0.13	+0.1
88,057	+		MMP_RS00445	0.13	-0.3
88,057	+		MMP_RS00445	0.13	-0.4
88,057	+		MMP_RS00445	0.13	-0.2
88,058	-		MMP_RS00445	0.13	+0.1
88,058	-		MMP_RS00445	0.13	+1.5
88,059	+		MMP_RS00445	0.13	+0.5
88,059	+		MMP_RS00445	0.13	-0.2
88,061	+		MMP_RS00445	0.14	+0.1
88,061	+		MMP_RS00445	0.14	+0.1
88,061	+		MMP_RS00445	0.14	-0.5
88,135	-		MMP_RS00445	0.24	-0.4
88,136	+		MMP_RS00445	0.24	-0.6
88,231	-		MMP_RS00445	0.37	+0.1
88,281	-		MMP_RS00445	0.44	+0.1
88,347	+		MMP_RS00445	0.53	-0.2
88,404	+		MMP_RS00445	0.61	-0.3
88,406	+		MMP_RS00445	0.61	-0.0
88,551	-		MMP_RS00445	0.81	+0.1
88,581	+		MMP_RS00445	0.85	-0.2
88,590	-		MMP_RS00445	0.86	+0.3
88,591	+		MMP_RS00445	0.86	+1.3
88,608	+		MMP_RS00445	0.89	+0.0
88,636	-				+0.0
88,637	+				+0.1
88,844	-		MMP_RS00450	0.16	+2.3
89,338	+		MMP_RS00450	0.75	+0.2
89,534	+				-0.1
89,553	-				+0.6
89,560	-				+0.5
89,561	+				+0.1
89,565	-				-0.3
89,618	-				-0.4
89,619	+				+0.6
89,620	-				+0.2
89,660	-				-0.1
89,660	-				+0.3
89,660	-				+0.3
89,660	-				-0.1
89,660	-				+0.1
89,661	+				+0.6
89,661	+				-0.1
89,661	+				+0.1
89,661	+				+0.1
89,662	-				+0.3
89,662	-				+0.0
89,662	-				-0.1
89,663	+				+0.7
89,663	+				-0.2
89,663	+				+0.2
89,699	-				+0.0
89,700	+				+0.8
89,712	-				+0.6
89,723	-				+0.3
89,926	-		MMP_RS00455	0.29	-0.4
89,969	-		MMP_RS00455	0.36	-0.2
90,089	-		MMP_RS00455	0.56	-0.2
90,089	-		MMP_RS00455	0.56	-0.5
90,090	+		MMP_RS00455	0.56	+0.3
90,091	-		MMP_RS00455	0.56	+0.4
90,091	-		MMP_RS00455	0.56	-0.1
90,091	-		MMP_RS00455	0.56	+0.7
90,093	-		MMP_RS00455	0.56	+0.5
90,093	-		MMP_RS00455	0.56	-0.2
90,093	-		MMP_RS00455	0.56	+0.1
90,094	+		MMP_RS00455	0.56	-0.1
90,186	+		MMP_RS00455	0.71	-0.1
90,319	-				+0.0
90,478	-				-2.5