Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00390 and MMP_RS00395 are separated by 60 nucleotides MMP_RS00395 and MMP_RS00400 are separated by 253 nucleotides
MMP_RS00390: MMP_RS00390 - ammonium transporter, at 79,353 to 80,588
_RS00390
MMP_RS00395: MMP_RS00395 - MGMT family protein, at 80,649 to 80,948
_RS00395
MMP_RS00400: MMP_RS00400 - tributyrin esterase, at 81,202 to 82,140
_RS00400
Position (kb) 80
81 Strain fitness (log2 ratio) -1
0
1 at 79.919 kb on + strand, within MMP_RS00390 at 80.013 kb on - strand, within MMP_RS00390 at 80.013 kb on - strand, within MMP_RS00390 at 80.014 kb on + strand, within MMP_RS00390 at 80.072 kb on - strand, within MMP_RS00390 at 80.086 kb on - strand, within MMP_RS00390 at 80.158 kb on - strand, within MMP_RS00390 at 80.158 kb on - strand, within MMP_RS00390 at 80.158 kb on - strand, within MMP_RS00390 at 80.161 kb on + strand, within MMP_RS00390 at 80.161 kb on + strand, within MMP_RS00390 at 80.161 kb on + strand, within MMP_RS00390 at 80.240 kb on + strand, within MMP_RS00390 at 80.279 kb on - strand, within MMP_RS00390 at 80.311 kb on - strand, within MMP_RS00390 at 80.312 kb on + strand, within MMP_RS00390 at 80.641 kb on - strand at 80.819 kb on + strand, within MMP_RS00395 at 80.952 kb on - strand at 81.070 kb on - strand at 81.075 kb on - strand at 81.086 kb on - strand at 81.087 kb on + strand at 81.089 kb on + strand at 81.122 kb on - strand at 81.161 kb on + strand at 81.164 kb on - strand at 81.181 kb on + strand at 81.599 kb on - strand, within MMP_RS00400 at 81.620 kb on - strand, within MMP_RS00400 at 81.620 kb on - strand, within MMP_RS00400 at 81.914 kb on - strand, within MMP_RS00400
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 79,919 + MMP_RS00390 0.46 -0.0 80,013 - MMP_RS00390 0.53 +0.2 80,013 - MMP_RS00390 0.53 +0.5 80,014 + MMP_RS00390 0.53 -0.1 80,072 - MMP_RS00390 0.58 +0.1 80,086 - MMP_RS00390 0.59 +0.5 80,158 - MMP_RS00390 0.65 -0.3 80,158 - MMP_RS00390 0.65 +0.0 80,158 - MMP_RS00390 0.65 +0.3 80,161 + MMP_RS00390 0.65 +0.0 80,161 + MMP_RS00390 0.65 +0.3 80,161 + MMP_RS00390 0.65 +0.4 80,240 + MMP_RS00390 0.72 -0.1 80,279 - MMP_RS00390 0.75 -0.2 80,311 - MMP_RS00390 0.78 +0.1 80,312 + MMP_RS00390 0.78 -0.3 80,641 - +0.2 80,819 + MMP_RS00395 0.57 +0.4 80,952 - +0.1 81,070 - +0.6 81,075 - -0.1 81,086 - +0.1 81,087 + -0.3 81,089 + +0.2 81,122 - -0.1 81,161 + +0.3 81,164 - +0.2 81,181 + +0.6 81,599 - MMP_RS00400 0.42 -0.1 81,620 - MMP_RS00400 0.45 -0.1 81,620 - MMP_RS00400 0.45 +0.1 81,914 - MMP_RS00400 0.76 -0.2
Or see this region's nucleotide sequence