Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26000

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25995 and BWI76_RS26000 overlap by 11 nucleotidesBWI76_RS26000 and BWI76_RS26005 are separated by 89 nucleotidesBWI76_RS26005 and BWI76_RS26010 are separated by 31 nucleotides BWI76_RS25995: BWI76_RS25995 - membrane protein, at 5,371,779 to 5,373,857 _RS25995 BWI76_RS26000: BWI76_RS26000 - aspartate aminotransferase family protein, at 5,373,847 to 5,375,067 _RS26000 BWI76_RS26005: BWI76_RS26005 - glutamine amidotransferase, at 5,375,157 to 5,375,720 _RS26005 BWI76_RS26010: BWI76_RS26010 - cell filamentation protein Fic, at 5,375,752 to 5,376,354 _RS26010 Position (kb) 5373 5374 5375 5376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5372.885 kb on + strand, within BWI76_RS25995at 5372.890 kb on + strand, within BWI76_RS25995at 5372.890 kb on + strand, within BWI76_RS25995at 5372.921 kb on - strand, within BWI76_RS25995at 5372.936 kb on + strand, within BWI76_RS25995at 5372.944 kb on - strand, within BWI76_RS25995at 5373.073 kb on - strand, within BWI76_RS25995at 5373.086 kb on - strand, within BWI76_RS25995at 5373.093 kb on - strand, within BWI76_RS25995at 5373.105 kb on - strand, within BWI76_RS25995at 5373.110 kb on - strand, within BWI76_RS25995at 5373.159 kb on - strand, within BWI76_RS25995at 5373.174 kb on - strand, within BWI76_RS25995at 5373.183 kb on + strand, within BWI76_RS25995at 5373.372 kb on - strand, within BWI76_RS25995at 5373.545 kb on + strand, within BWI76_RS25995at 5373.553 kb on - strand, within BWI76_RS25995at 5373.569 kb on - strand, within BWI76_RS25995at 5373.618 kb on - strand, within BWI76_RS25995at 5373.930 kb on + strandat 5373.948 kb on - strandat 5374.067 kb on + strand, within BWI76_RS26000at 5374.262 kb on + strand, within BWI76_RS26000at 5374.302 kb on + strand, within BWI76_RS26000at 5374.312 kb on + strand, within BWI76_RS26000at 5374.312 kb on + strand, within BWI76_RS26000at 5374.315 kb on - strand, within BWI76_RS26000at 5374.396 kb on + strand, within BWI76_RS26000at 5374.418 kb on - strand, within BWI76_RS26000at 5374.475 kb on - strand, within BWI76_RS26000at 5374.649 kb on + strand, within BWI76_RS26000at 5374.823 kb on - strand, within BWI76_RS26000at 5374.970 kb on + strandat 5374.978 kb on - strandat 5375.294 kb on + strand, within BWI76_RS26005at 5375.367 kb on - strand, within BWI76_RS26005at 5375.781 kb on - strandat 5375.781 kb on - strandat 5375.850 kb on - strand, within BWI76_RS26010at 5375.870 kb on - strand, within BWI76_RS26010at 5375.982 kb on - strand, within BWI76_RS26010at 5376.018 kb on + strand, within BWI76_RS26010

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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5,372,885 + BWI76_RS25995 0.53 -0.7
5,372,890 + BWI76_RS25995 0.53 +0.1
5,372,890 + BWI76_RS25995 0.53 -0.3
5,372,921 - BWI76_RS25995 0.55 +1.0
5,372,936 + BWI76_RS25995 0.56 +0.1
5,372,944 - BWI76_RS25995 0.56 +1.3
5,373,073 - BWI76_RS25995 0.62 -1.0
5,373,086 - BWI76_RS25995 0.63 -0.5
5,373,093 - BWI76_RS25995 0.63 -0.0
5,373,105 - BWI76_RS25995 0.64 -0.5
5,373,110 - BWI76_RS25995 0.64 -2.7
5,373,159 - BWI76_RS25995 0.66 +0.2
5,373,174 - BWI76_RS25995 0.67 -0.1
5,373,183 + BWI76_RS25995 0.68 +0.3
5,373,372 - BWI76_RS25995 0.77 -0.4
5,373,545 + BWI76_RS25995 0.85 +0.1
5,373,553 - BWI76_RS25995 0.85 +0.4
5,373,569 - BWI76_RS25995 0.86 -1.3
5,373,618 - BWI76_RS25995 0.88 +0.4
5,373,930 + +0.4
5,373,948 - -1.1
5,374,067 + BWI76_RS26000 0.18 -1.5
5,374,262 + BWI76_RS26000 0.34 -2.4
5,374,302 + BWI76_RS26000 0.37 -2.2
5,374,312 + BWI76_RS26000 0.38 -2.4
5,374,312 + BWI76_RS26000 0.38 -1.5
5,374,315 - BWI76_RS26000 0.38 -3.1
5,374,396 + BWI76_RS26000 0.45 -4.0
5,374,418 - BWI76_RS26000 0.47 -2.5
5,374,475 - BWI76_RS26000 0.51 -1.8
5,374,649 + BWI76_RS26000 0.66 +2.4
5,374,823 - BWI76_RS26000 0.80 -0.4
5,374,970 + -2.0
5,374,978 - -1.0
5,375,294 + BWI76_RS26005 0.24 -0.5
5,375,367 - BWI76_RS26005 0.37 +0.1
5,375,781 - +1.1
5,375,781 - +0.3
5,375,850 - BWI76_RS26010 0.16 +0.2
5,375,870 - BWI76_RS26010 0.20 +0.3
5,375,982 - BWI76_RS26010 0.38 +0.4
5,376,018 + BWI76_RS26010 0.44 -1.5

Or see this region's nucleotide sequence