Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24900

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24895 and BWI76_RS24900 are separated by 110 nucleotidesBWI76_RS24900 and BWI76_RS24905 are separated by 64 nucleotides BWI76_RS24895: BWI76_RS24895 - galactitol-1-phosphate 5-dehydrogenase, at 5,187,513 to 5,188,556 _RS24895 BWI76_RS24900: BWI76_RS24900 - DeoR family transcriptional regulator, at 5,188,667 to 5,189,440 _RS24900 BWI76_RS24905: BWI76_RS24905 - filamentation induced by cAMP protein fic, at 5,189,505 to 5,190,506 _RS24905 Position (kb) 5188 5189 5190Strain fitness (log2 ratio) -1 0 1at 5187.899 kb on - strand, within BWI76_RS24895at 5188.147 kb on + strand, within BWI76_RS24895at 5188.147 kb on + strand, within BWI76_RS24895at 5188.286 kb on + strand, within BWI76_RS24895at 5188.324 kb on - strand, within BWI76_RS24895at 5188.389 kb on - strand, within BWI76_RS24895at 5188.500 kb on + strandat 5188.674 kb on + strandat 5188.833 kb on + strand, within BWI76_RS24900at 5188.991 kb on + strand, within BWI76_RS24900at 5189.060 kb on + strand, within BWI76_RS24900at 5189.135 kb on + strand, within BWI76_RS24900at 5189.410 kb on - strandat 5189.450 kb on - strandat 5189.470 kb on + strandat 5189.620 kb on + strand, within BWI76_RS24905at 5189.627 kb on - strand, within BWI76_RS24905at 5189.830 kb on - strand, within BWI76_RS24905at 5189.844 kb on - strand, within BWI76_RS24905at 5189.921 kb on + strand, within BWI76_RS24905at 5189.976 kb on + strand, within BWI76_RS24905at 5189.994 kb on + strand, within BWI76_RS24905at 5190.067 kb on + strand, within BWI76_RS24905at 5190.123 kb on + strand, within BWI76_RS24905at 5190.300 kb on - strand, within BWI76_RS24905at 5190.344 kb on - strand, within BWI76_RS24905at 5190.344 kb on - strand, within BWI76_RS24905at 5190.406 kb on + strandat 5190.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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5,187,899 - BWI76_RS24895 0.37 -0.2
5,188,147 + BWI76_RS24895 0.61 +0.3
5,188,147 + BWI76_RS24895 0.61 +0.1
5,188,286 + BWI76_RS24895 0.74 -0.3
5,188,324 - BWI76_RS24895 0.78 +0.3
5,188,389 - BWI76_RS24895 0.84 +0.5
5,188,500 + -0.7
5,188,674 + -1.4
5,188,833 + BWI76_RS24900 0.21 +0.7
5,188,991 + BWI76_RS24900 0.42 -1.5
5,189,060 + BWI76_RS24900 0.51 -1.7
5,189,135 + BWI76_RS24900 0.60 -1.5
5,189,410 - +0.0
5,189,450 - -0.4
5,189,470 + -0.4
5,189,620 + BWI76_RS24905 0.11 +0.2
5,189,627 - BWI76_RS24905 0.12 -0.9
5,189,830 - BWI76_RS24905 0.32 +0.2
5,189,844 - BWI76_RS24905 0.34 +0.1
5,189,921 + BWI76_RS24905 0.42 +0.9
5,189,976 + BWI76_RS24905 0.47 -0.2
5,189,994 + BWI76_RS24905 0.49 +0.3
5,190,067 + BWI76_RS24905 0.56 -0.2
5,190,123 + BWI76_RS24905 0.62 -0.7
5,190,300 - BWI76_RS24905 0.79 +0.7
5,190,344 - BWI76_RS24905 0.84 +0.5
5,190,344 - BWI76_RS24905 0.84 +0.8
5,190,406 + -0.7
5,190,410 - -0.2

Or see this region's nucleotide sequence