Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23895

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23890 and BWI76_RS23895 overlap by 4 nucleotidesBWI76_RS23895 and BWI76_RS23900 are separated by 28 nucleotidesBWI76_RS23900 and BWI76_RS23905 are separated by 159 nucleotides BWI76_RS23890: BWI76_RS23890 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 4,986,629 to 4,987,807 _RS23890 BWI76_RS23895: BWI76_RS23895 - Xaa-Pro aminopeptidase, at 4,987,804 to 4,989,120 _RS23895 BWI76_RS23900: BWI76_RS23900 - hypothetical protein, at 4,989,149 to 4,989,733 _RS23900 BWI76_RS23905: BWI76_RS23905 - Z-ring-associated protein, at 4,989,893 to 4,990,222 _RS23905 Position (kb) 4987 4988 4989 4990Strain fitness (log2 ratio) -2 -1 0 1at 4987.969 kb on - strand, within BWI76_RS23895at 4988.406 kb on - strand, within BWI76_RS23895at 4988.824 kb on - strand, within BWI76_RS23895at 4989.135 kb on - strandat 4989.254 kb on - strand, within BWI76_RS23900at 4989.317 kb on - strand, within BWI76_RS23900at 4989.661 kb on - strand, within BWI76_RS23900at 4989.726 kb on - strandat 4989.726 kb on - strandat 4989.780 kb on - strandat 4989.815 kb on - strandat 4989.828 kb on + strandat 4989.964 kb on - strand, within BWI76_RS23905at 4989.968 kb on + strand, within BWI76_RS23905at 4989.969 kb on + strand, within BWI76_RS23905at 4989.969 kb on + strand, within BWI76_RS23905at 4989.976 kb on - strand, within BWI76_RS23905

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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4,987,969 - BWI76_RS23895 0.13 -1.1
4,988,406 - BWI76_RS23895 0.46 -2.0
4,988,824 - BWI76_RS23895 0.77 -0.1
4,989,135 - +0.4
4,989,254 - BWI76_RS23900 0.18 +0.1
4,989,317 - BWI76_RS23900 0.29 +0.1
4,989,661 - BWI76_RS23900 0.88 +0.9
4,989,726 - +0.6
4,989,726 - +0.2
4,989,780 - +0.2
4,989,815 - +0.6
4,989,828 + +0.2
4,989,964 - BWI76_RS23905 0.22 -0.2
4,989,968 + BWI76_RS23905 0.23 -0.3
4,989,969 + BWI76_RS23905 0.23 -0.0
4,989,969 + BWI76_RS23905 0.23 -0.1
4,989,976 - BWI76_RS23905 0.25 +0.8

Or see this region's nucleotide sequence