Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19090

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19080 and BWI76_RS19085 are separated by 17 nucleotidesBWI76_RS19085 and BWI76_RS19090 overlap by 1 nucleotidesBWI76_RS19090 and BWI76_RS19095 are separated by 129 nucleotides BWI76_RS19080: BWI76_RS19080 - tyrosine autokinase, at 3,962,577 to 3,964,739 _RS19080 BWI76_RS19085: BWI76_RS19085 - protein-tyrosine-phosphatase, at 3,964,757 to 3,965,191 _RS19085 BWI76_RS19090: BWI76_RS19090 - polysaccharide export protein Wza, at 3,965,191 to 3,966,330 _RS19090 BWI76_RS19095: BWI76_RS19095 - hypothetical protein, at 3,966,460 to 3,967,893 _RS19095 Position (kb) 3965 3966 3967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3964.212 kb on - strand, within BWI76_RS19080at 3964.263 kb on - strand, within BWI76_RS19080at 3964.263 kb on - strand, within BWI76_RS19080at 3964.277 kb on - strand, within BWI76_RS19080at 3964.277 kb on - strand, within BWI76_RS19080at 3964.277 kb on - strand, within BWI76_RS19080at 3964.277 kb on - strand, within BWI76_RS19080at 3964.341 kb on - strand, within BWI76_RS19080at 3964.362 kb on - strand, within BWI76_RS19080at 3964.363 kb on + strand, within BWI76_RS19080at 3964.376 kb on - strand, within BWI76_RS19080at 3964.377 kb on - strand, within BWI76_RS19080at 3964.377 kb on - strand, within BWI76_RS19080at 3964.377 kb on - strand, within BWI76_RS19080at 3964.406 kb on - strand, within BWI76_RS19080at 3964.408 kb on + strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.416 kb on - strand, within BWI76_RS19080at 3964.430 kb on - strand, within BWI76_RS19080at 3964.430 kb on - strand, within BWI76_RS19080at 3964.440 kb on - strand, within BWI76_RS19080at 3964.440 kb on - strand, within BWI76_RS19080at 3964.440 kb on - strand, within BWI76_RS19080at 3964.446 kb on - strand, within BWI76_RS19080at 3964.461 kb on - strand, within BWI76_RS19080at 3964.472 kb on - strand, within BWI76_RS19080at 3964.489 kb on - strand, within BWI76_RS19080at 3964.553 kb on - strandat 3964.555 kb on + strandat 3964.563 kb on - strandat 3964.563 kb on - strandat 3964.631 kb on - strandat 3964.771 kb on + strandat 3964.777 kb on - strandat 3964.779 kb on - strandat 3964.781 kb on + strandat 3964.781 kb on + strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.789 kb on - strandat 3964.849 kb on - strand, within BWI76_RS19085at 3964.853 kb on - strand, within BWI76_RS19085at 3964.854 kb on - strand, within BWI76_RS19085at 3964.854 kb on - strand, within BWI76_RS19085at 3964.859 kb on - strand, within BWI76_RS19085at 3964.864 kb on + strand, within BWI76_RS19085at 3964.904 kb on - strand, within BWI76_RS19085at 3964.909 kb on - strand, within BWI76_RS19085at 3964.909 kb on - strand, within BWI76_RS19085at 3964.955 kb on + strand, within BWI76_RS19085at 3964.963 kb on - strand, within BWI76_RS19085at 3964.981 kb on - strand, within BWI76_RS19085at 3964.981 kb on - strand, within BWI76_RS19085at 3964.991 kb on + strand, within BWI76_RS19085at 3964.999 kb on - strand, within BWI76_RS19085at 3964.999 kb on - strand, within BWI76_RS19085at 3965.000 kb on - strand, within BWI76_RS19085at 3965.010 kb on + strand, within BWI76_RS19085at 3965.018 kb on - strand, within BWI76_RS19085at 3965.018 kb on - strand, within BWI76_RS19085at 3965.018 kb on - strand, within BWI76_RS19085at 3965.018 kb on - strand, within BWI76_RS19085at 3965.018 kb on - strand, within BWI76_RS19085at 3965.048 kb on + strand, within BWI76_RS19085at 3965.066 kb on - strand, within BWI76_RS19085at 3965.082 kb on - strand, within BWI76_RS19085at 3965.136 kb on + strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.143 kb on - strand, within BWI76_RS19085at 3965.145 kb on - strand, within BWI76_RS19085at 3965.155 kb on + strandat 3965.161 kb on - strandat 3965.161 kb on - strandat 3965.168 kb on - strandat 3965.270 kb on - strandat 3965.295 kb on + strandat 3965.415 kb on - strand, within BWI76_RS19090at 3965.437 kb on + strand, within BWI76_RS19090at 3965.445 kb on - strand, within BWI76_RS19090at 3965.463 kb on + strand, within BWI76_RS19090at 3965.482 kb on + strand, within BWI76_RS19090at 3965.498 kb on + strand, within BWI76_RS19090at 3965.498 kb on + strand, within BWI76_RS19090at 3965.506 kb on - strand, within BWI76_RS19090at 3965.528 kb on + strand, within BWI76_RS19090at 3965.575 kb on + strand, within BWI76_RS19090at 3965.617 kb on + strandat 3965.622 kb on + strand, within BWI76_RS19090at 3965.622 kb on + strand, within BWI76_RS19090at 3965.653 kb on - strand, within BWI76_RS19090at 3965.653 kb on - strand, within BWI76_RS19090at 3965.653 kb on - strand, within BWI76_RS19090at 3965.671 kb on - strand, within BWI76_RS19090at 3965.715 kb on - strand, within BWI76_RS19090at 3965.912 kb on - strand, within BWI76_RS19090at 3965.919 kb on - strand, within BWI76_RS19090at 3965.919 kb on - strand, within BWI76_RS19090at 3965.969 kb on - strand, within BWI76_RS19090at 3965.969 kb on - strand, within BWI76_RS19090at 3965.969 kb on - strand, within BWI76_RS19090at 3965.983 kb on + strand, within BWI76_RS19090at 3966.017 kb on - strand, within BWI76_RS19090at 3966.019 kb on + strand, within BWI76_RS19090at 3966.032 kb on - strand, within BWI76_RS19090at 3966.066 kb on + strand, within BWI76_RS19090at 3966.160 kb on - strand, within BWI76_RS19090at 3966.206 kb on + strand, within BWI76_RS19090at 3966.291 kb on - strandat 3966.295 kb on + strandat 3966.357 kb on - strandat 3966.402 kb on + strandat 3966.538 kb on - strandat 3966.560 kb on + strandat 3966.562 kb on + strandat 3966.568 kb on - strandat 3966.568 kb on - strandat 3966.568 kb on - strandat 3966.591 kb on - strandat 3966.664 kb on + strand, within BWI76_RS19095at 3966.664 kb on + strand, within BWI76_RS19095at 3966.664 kb on + strand, within BWI76_RS19095at 3966.664 kb on + strand, within BWI76_RS19095at 3966.664 kb on + strand, within BWI76_RS19095at 3966.664 kb on + strand, within BWI76_RS19095at 3966.664 kb on + strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strandat 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.672 kb on - strand, within BWI76_RS19095at 3966.719 kb on + strand, within BWI76_RS19095at 3966.756 kb on + strand, within BWI76_RS19095at 3966.756 kb on + strand, within BWI76_RS19095at 3966.771 kb on + strandat 3966.820 kb on + strand, within BWI76_RS19095at 3966.828 kb on - strand, within BWI76_RS19095at 3966.828 kb on - strand, within BWI76_RS19095at 3966.828 kb on - strand, within BWI76_RS19095at 3966.828 kb on - strand, within BWI76_RS19095at 3967.176 kb on - strand, within BWI76_RS19095at 3967.266 kb on + strand, within BWI76_RS19095at 3967.285 kb on + strand, within BWI76_RS19095at 3967.290 kb on + strand, within BWI76_RS19095at 3967.293 kb on - strand, within BWI76_RS19095at 3967.298 kb on - strand, within BWI76_RS19095at 3967.298 kb on - strand, within BWI76_RS19095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
3,964,212 - BWI76_RS19080 0.76 -0.5
3,964,263 - BWI76_RS19080 0.78 -2.2
3,964,263 - BWI76_RS19080 0.78 -2.4
3,964,277 - BWI76_RS19080 0.79 -1.5
3,964,277 - BWI76_RS19080 0.79 -0.1
3,964,277 - BWI76_RS19080 0.79 -2.2
3,964,277 - BWI76_RS19080 0.79 -0.7
3,964,341 - BWI76_RS19080 0.82 -0.9
3,964,362 - BWI76_RS19080 0.83 -1.6
3,964,363 + BWI76_RS19080 0.83 -2.0
3,964,376 - BWI76_RS19080 0.83 -1.4
3,964,377 - BWI76_RS19080 0.83 -1.3
3,964,377 - BWI76_RS19080 0.83 +0.5
3,964,377 - BWI76_RS19080 0.83 +0.9
3,964,406 - BWI76_RS19080 0.85 -1.2
3,964,408 + BWI76_RS19080 0.85 -2.6
3,964,416 - BWI76_RS19080 0.85 -1.8
3,964,416 - BWI76_RS19080 0.85 -1.0
3,964,416 - BWI76_RS19080 0.85 -1.7
3,964,416 - BWI76_RS19080 0.85 -1.9
3,964,416 - BWI76_RS19080 0.85 -2.5
3,964,416 - BWI76_RS19080 0.85 -1.0
3,964,416 - BWI76_RS19080 0.85 -0.6
3,964,416 - BWI76_RS19080 0.85 -1.7
3,964,416 - BWI76_RS19080 0.85 -3.1
3,964,416 - BWI76_RS19080 0.85 -0.7
3,964,416 - BWI76_RS19080 0.85 -1.3
3,964,416 - BWI76_RS19080 0.85 +0.0
3,964,430 - BWI76_RS19080 0.86 -1.2
3,964,430 - BWI76_RS19080 0.86 +0.3
3,964,440 - BWI76_RS19080 0.86 -1.4
3,964,440 - BWI76_RS19080 0.86 -1.3
3,964,440 - BWI76_RS19080 0.86 -1.1
3,964,446 - BWI76_RS19080 0.86 -2.0
3,964,461 - BWI76_RS19080 0.87 -1.3
3,964,472 - BWI76_RS19080 0.88 -1.2
3,964,489 - BWI76_RS19080 0.88 -0.5
3,964,553 - -2.2
3,964,555 + -2.0
3,964,563 - +0.8
3,964,563 - -2.1
3,964,631 - -2.0
3,964,771 + -1.0
3,964,777 - -0.9
3,964,779 - -0.2
3,964,781 + +0.8
3,964,781 + -2.5
3,964,789 - -0.9
3,964,789 - -1.9
3,964,789 - -0.7
3,964,789 - -1.4
3,964,789 - -1.0
3,964,789 - -2.3
3,964,789 - -1.7
3,964,789 - -0.7
3,964,789 - -0.4
3,964,789 - -1.2
3,964,789 - -1.3
3,964,789 - -1.5
3,964,789 - -1.3
3,964,789 - -1.1
3,964,789 - -1.6
3,964,789 - -1.0
3,964,789 - -1.6
3,964,789 - -1.8
3,964,789 - -1.1
3,964,789 - -1.5
3,964,789 - -1.2
3,964,849 - BWI76_RS19085 0.21 -2.1
3,964,853 - BWI76_RS19085 0.22 -1.7
3,964,854 - BWI76_RS19085 0.22 -1.4
3,964,854 - BWI76_RS19085 0.22 -1.0
3,964,859 - BWI76_RS19085 0.23 -2.2
3,964,864 + BWI76_RS19085 0.25 -1.2
3,964,904 - BWI76_RS19085 0.34 -0.4
3,964,909 - BWI76_RS19085 0.35 -0.5
3,964,909 - BWI76_RS19085 0.35 -1.6
3,964,955 + BWI76_RS19085 0.46 -0.4
3,964,963 - BWI76_RS19085 0.47 -2.7
3,964,981 - BWI76_RS19085 0.51 -1.9
3,964,981 - BWI76_RS19085 0.51 -2.4
3,964,991 + BWI76_RS19085 0.54 -1.9
3,964,999 - BWI76_RS19085 0.56 -0.8
3,964,999 - BWI76_RS19085 0.56 -1.4
3,965,000 - BWI76_RS19085 0.56 -0.7
3,965,010 + BWI76_RS19085 0.58 -1.0
3,965,018 - BWI76_RS19085 0.60 -1.0
3,965,018 - BWI76_RS19085 0.60 -0.8
3,965,018 - BWI76_RS19085 0.60 -1.4
3,965,018 - BWI76_RS19085 0.60 -0.6
3,965,018 - BWI76_RS19085 0.60 -1.4
3,965,048 + BWI76_RS19085 0.67 -0.8
3,965,066 - BWI76_RS19085 0.71 -3.1
3,965,082 - BWI76_RS19085 0.75 -2.1
3,965,136 + BWI76_RS19085 0.87 -2.7
3,965,143 - BWI76_RS19085 0.89 -1.3
3,965,143 - BWI76_RS19085 0.89 -1.7
3,965,143 - BWI76_RS19085 0.89 -1.4
3,965,143 - BWI76_RS19085 0.89 -0.8
3,965,143 - BWI76_RS19085 0.89 -1.2
3,965,143 - BWI76_RS19085 0.89 -3.0
3,965,143 - BWI76_RS19085 0.89 -1.0
3,965,143 - BWI76_RS19085 0.89 -0.7
3,965,143 - BWI76_RS19085 0.89 -1.1
3,965,143 - BWI76_RS19085 0.89 -0.9
3,965,145 - BWI76_RS19085 0.89 -0.5
3,965,155 + +1.3
3,965,161 - +0.3
3,965,161 - -1.0
3,965,168 - -1.6
3,965,270 - -0.2
3,965,295 + +1.3
3,965,415 - BWI76_RS19090 0.20 -1.6
3,965,437 + BWI76_RS19090 0.22 -0.5
3,965,445 - BWI76_RS19090 0.22 -1.0
3,965,463 + BWI76_RS19090 0.24 -2.8
3,965,482 + BWI76_RS19090 0.26 -0.7
3,965,498 + BWI76_RS19090 0.27 +0.2
3,965,498 + BWI76_RS19090 0.27 -0.8
3,965,506 - BWI76_RS19090 0.28 -1.1
3,965,528 + BWI76_RS19090 0.30 -1.0
3,965,575 + BWI76_RS19090 0.34 -0.7
3,965,617 + -1.5
3,965,622 + BWI76_RS19090 0.38 -1.6
3,965,622 + BWI76_RS19090 0.38 -1.1
3,965,653 - BWI76_RS19090 0.41 -1.6
3,965,653 - BWI76_RS19090 0.41 -2.2
3,965,653 - BWI76_RS19090 0.41 -1.7
3,965,671 - BWI76_RS19090 0.42 -1.7
3,965,715 - BWI76_RS19090 0.46 -1.6
3,965,912 - BWI76_RS19090 0.63 -1.4
3,965,919 - BWI76_RS19090 0.64 -0.9
3,965,919 - BWI76_RS19090 0.64 -1.4
3,965,969 - BWI76_RS19090 0.68 -1.1
3,965,969 - BWI76_RS19090 0.68 -1.1
3,965,969 - BWI76_RS19090 0.68 -0.9
3,965,983 + BWI76_RS19090 0.69 -1.2
3,966,017 - BWI76_RS19090 0.72 -0.8
3,966,019 + BWI76_RS19090 0.73 +1.3
3,966,032 - BWI76_RS19090 0.74 -1.7
3,966,066 + BWI76_RS19090 0.77 -1.4
3,966,160 - BWI76_RS19090 0.85 -0.3
3,966,206 + BWI76_RS19090 0.89 -0.5
3,966,291 - -1.5
3,966,295 + -2.9
3,966,357 - +0.2
3,966,402 + +1.5
3,966,538 - +0.1
3,966,560 + +2.3
3,966,562 + -0.6
3,966,568 - -0.5
3,966,568 - +0.4
3,966,568 - +0.3
3,966,591 - +0.2
3,966,664 + BWI76_RS19095 0.14 -2.5
3,966,664 + BWI76_RS19095 0.14 -0.7
3,966,664 + BWI76_RS19095 0.14 -0.2
3,966,664 + BWI76_RS19095 0.14 -0.0
3,966,664 + BWI76_RS19095 0.14 -0.8
3,966,664 + BWI76_RS19095 0.14 -0.9
3,966,664 + BWI76_RS19095 0.14 -1.1
3,966,672 - BWI76_RS19095 0.15 +1.3
3,966,672 - BWI76_RS19095 0.15 -0.1
3,966,672 - BWI76_RS19095 0.15 -0.0
3,966,672 - BWI76_RS19095 0.15 +0.2
3,966,672 - BWI76_RS19095 0.15 -0.4
3,966,672 - BWI76_RS19095 0.15 -0.4
3,966,672 - +1.9
3,966,672 - BWI76_RS19095 0.15 -0.1
3,966,672 - BWI76_RS19095 0.15 -0.5
3,966,672 - BWI76_RS19095 0.15 +0.1
3,966,672 - BWI76_RS19095 0.15 -0.1
3,966,672 - BWI76_RS19095 0.15 +0.8
3,966,672 - BWI76_RS19095 0.15 +0.3
3,966,672 - BWI76_RS19095 0.15 -1.0
3,966,672 - BWI76_RS19095 0.15 -0.1
3,966,672 - BWI76_RS19095 0.15 -0.2
3,966,672 - BWI76_RS19095 0.15 -1.8
3,966,672 - BWI76_RS19095 0.15 -0.4
3,966,672 - BWI76_RS19095 0.15 -0.7
3,966,672 - BWI76_RS19095 0.15 -0.0
3,966,719 + BWI76_RS19095 0.18 -0.0
3,966,756 + BWI76_RS19095 0.21 -0.0
3,966,756 + BWI76_RS19095 0.21 -0.3
3,966,771 + -1.2
3,966,820 + BWI76_RS19095 0.25 -0.7
3,966,828 - BWI76_RS19095 0.26 +1.2
3,966,828 - BWI76_RS19095 0.26 +1.2
3,966,828 - BWI76_RS19095 0.26 -0.9
3,966,828 - BWI76_RS19095 0.26 -0.1
3,967,176 - BWI76_RS19095 0.50 +0.3
3,967,266 + BWI76_RS19095 0.56 -0.8
3,967,285 + BWI76_RS19095 0.58 +0.0
3,967,290 + BWI76_RS19095 0.58 +0.6
3,967,293 - BWI76_RS19095 0.58 +0.1
3,967,298 - BWI76_RS19095 0.58 -0.9
3,967,298 - BWI76_RS19095 0.58 -0.2

Or see this region's nucleotide sequence