Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19005 and BWI76_RS19010 overlap by 4 nucleotides BWI76_RS19010 and BWI76_RS19015 are separated by 16 nucleotides BWI76_RS19015 and BWI76_RS19020 are separated by 224 nucleotides
BWI76_RS19005: BWI76_RS19005 - capsular polysaccharide biosynthesis protein, at 3,945,052 to 3,946,038
_RS19005
BWI76_RS19010: BWI76_RS19010 - polysaccharide pyruvyl transferase yvff, at 3,946,035 to 3,946,982
_RS19010
BWI76_RS19015: BWI76_RS19015 - lipopolysaccharide biosynthesis protein, at 3,946,999 to 3,948,471
_RS19015
BWI76_RS19020: BWI76_RS19020 - UDP-glucose 6-dehydrogenase, at 3,948,696 to 3,949,862
_RS19020
Position (kb)
3946
3947
3948
3949 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3946.074 kb on - strand at 3946.151 kb on + strand, within BWI76_RS19010 at 3946.241 kb on - strand, within BWI76_RS19010 at 3946.243 kb on - strand, within BWI76_RS19010 at 3946.435 kb on - strand, within BWI76_RS19010 at 3946.435 kb on - strand, within BWI76_RS19010 at 3946.504 kb on - strand, within BWI76_RS19010 at 3946.986 kb on - strand at 3948.560 kb on - strand at 3948.560 kb on - strand at 3948.560 kb on - strand at 3948.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,946,074 - +0.3 3,946,151 + BWI76_RS19010 0.12 -1.0 3,946,241 - BWI76_RS19010 0.22 -4.4 3,946,243 - BWI76_RS19010 0.22 -3.1 3,946,435 - BWI76_RS19010 0.42 -2.1 3,946,435 - BWI76_RS19010 0.42 -1.8 3,946,504 - BWI76_RS19010 0.49 -3.0 3,946,986 - -3.7 3,948,560 - +1.9 3,948,560 - -0.7 3,948,560 - +2.9 3,948,560 - -1.0
Or see this region's nucleotide sequence