Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18165

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18155 and BWI76_RS18160 are separated by 37 nucleotidesBWI76_RS18160 and BWI76_RS18165 are separated by 28 nucleotidesBWI76_RS18165 and BWI76_RS18170 are separated by 1 nucleotides BWI76_RS18155: BWI76_RS18155 - crossover junction endodeoxyribonuclease RuvC, at 3,773,122 to 3,773,643 _RS18155 BWI76_RS18160: BWI76_RS18160 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,773,681 to 3,774,421 _RS18160 BWI76_RS18165: BWI76_RS18165 - NUDIX pyrophosphatase, at 3,774,450 to 3,774,893 _RS18165 BWI76_RS18170: BWI76_RS18170 - aspartate--tRNA ligase, at 3,774,895 to 3,776,682 _RS18170 Position (kb) 3774 3775Strain fitness (log2 ratio) -2 -1 0 1at 3774.045 kb on + strand, within BWI76_RS18160at 3774.158 kb on - strand, within BWI76_RS18160at 3774.396 kb on - strandat 3774.396 kb on - strandat 3774.501 kb on - strand, within BWI76_RS18165at 3774.780 kb on + strand, within BWI76_RS18165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
3,774,045 + BWI76_RS18160 0.49 -0.8
3,774,158 - BWI76_RS18160 0.64 +0.3
3,774,396 - +0.4
3,774,396 - -0.5
3,774,501 - BWI76_RS18165 0.11 -2.0
3,774,780 + BWI76_RS18165 0.74 -1.1

Or see this region's nucleotide sequence