Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16205

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16200 and BWI76_RS16205 are separated by 10 nucleotidesBWI76_RS16205 and BWI76_RS16210 are separated by 343 nucleotidesBWI76_RS16210 and BWI76_RS16215 overlap by 4 nucleotides BWI76_RS16200: BWI76_RS16200 - NAD(P) transhydrogenase subunit beta, at 3,360,887 to 3,362,275 _RS16200 BWI76_RS16205: BWI76_RS16205 - NAD(P) transhydrogenase subunit alpha, at 3,362,286 to 3,363,815 _RS16205 BWI76_RS16210: BWI76_RS16210 - hypothetical protein, at 3,364,159 to 3,364,341 _RS16210 BWI76_RS16215: BWI76_RS16215 - hypothetical protein, at 3,364,338 to 3,365,288 _RS16215 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1at 3361.714 kb on + strand, within BWI76_RS16200at 3361.912 kb on + strand, within BWI76_RS16200at 3361.920 kb on - strand, within BWI76_RS16200at 3362.174 kb on - strandat 3362.182 kb on + strandat 3362.246 kb on + strandat 3362.250 kb on - strandat 3362.283 kb on + strandat 3362.291 kb on - strandat 3362.404 kb on + strandat 3362.457 kb on + strand, within BWI76_RS16205at 3362.797 kb on + strand, within BWI76_RS16205at 3363.199 kb on + strand, within BWI76_RS16205at 3363.293 kb on + strand, within BWI76_RS16205at 3363.315 kb on - strand, within BWI76_RS16205at 3363.786 kb on - strandat 3363.893 kb on + strandat 3364.072 kb on + strandat 3364.250 kb on + strand, within BWI76_RS16210at 3364.318 kb on - strand, within BWI76_RS16210at 3364.356 kb on + strandat 3364.364 kb on - strandat 3364.458 kb on + strand, within BWI76_RS16215at 3364.581 kb on - strand, within BWI76_RS16215at 3364.813 kb on + strand, within BWI76_RS16215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,361,714 + BWI76_RS16200 0.60 -0.5
3,361,912 + BWI76_RS16200 0.74 -0.1
3,361,920 - BWI76_RS16200 0.74 -0.5
3,362,174 - +0.9
3,362,182 + -0.6
3,362,246 + -1.0
3,362,250 - +0.2
3,362,283 + -0.6
3,362,291 - -0.6
3,362,404 + +0.0
3,362,457 + BWI76_RS16205 0.11 -0.4
3,362,797 + BWI76_RS16205 0.33 -0.5
3,363,199 + BWI76_RS16205 0.60 -1.9
3,363,293 + BWI76_RS16205 0.66 -1.0
3,363,315 - BWI76_RS16205 0.67 -0.8
3,363,786 - -1.3
3,363,893 + +0.3
3,364,072 + -0.9
3,364,250 + BWI76_RS16210 0.50 -1.4
3,364,318 - BWI76_RS16210 0.87 -1.0
3,364,356 + +1.3
3,364,364 - +1.3
3,364,458 + BWI76_RS16215 0.13 -0.3
3,364,581 - BWI76_RS16215 0.26 +0.2
3,364,813 + BWI76_RS16215 0.50 +0.3

Or see this region's nucleotide sequence