Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15275

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotidesBWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotidesBWI76_RS15275 and BWI76_RS15280 are separated by 204 nucleotides BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097 _RS15265 BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028 _RS15270 BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829 _RS15275 BWI76_RS15280: BWI76_RS15280 - sugar transporter, at 3,202,034 to 3,203,233 _RS15280 Position (kb) 3201 3202Strain fitness (log2 ratio) -1 0 1 2at 3200.165 kb on + strandat 3200.241 kb on - strandat 3200.246 kb on - strandat 3200.246 kb on - strandat 3200.653 kb on + strand, within BWI76_RS15270at 3200.875 kb on + strand, within BWI76_RS15270at 3200.896 kb on + strand, within BWI76_RS15270at 3201.277 kb on - strand, within BWI76_RS15275at 3201.401 kb on - strand, within BWI76_RS15275at 3201.406 kb on - strand, within BWI76_RS15275at 3201.664 kb on + strand, within BWI76_RS15275at 3201.839 kb on - strandat 3201.924 kb on + strandat 3202.023 kb on + strandat 3202.138 kb on + strandat 3202.233 kb on + strand, within BWI76_RS15280at 3202.605 kb on - strand, within BWI76_RS15280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,200,165 + +1.2
3,200,241 - -0.3
3,200,246 - -0.1
3,200,246 - -0.6
3,200,653 + BWI76_RS15270 0.52 +0.2
3,200,875 + BWI76_RS15270 0.80 -0.2
3,200,896 + BWI76_RS15270 0.83 +0.2
3,201,277 - BWI76_RS15275 0.30 +0.3
3,201,401 - BWI76_RS15275 0.46 +0.1
3,201,406 - BWI76_RS15275 0.46 +2.1
3,201,664 + BWI76_RS15275 0.79 -0.3
3,201,839 - +0.3
3,201,924 + -0.5
3,202,023 + +0.8
3,202,138 + -0.9
3,202,233 + BWI76_RS15280 0.17 -0.3
3,202,605 - BWI76_RS15280 0.48 +0.4

Or see this region's nucleotide sequence