Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13780 and BWI76_RS13785 overlap by 4 nucleotides BWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotides BWI76_RS13790 and BWI76_RS13795 are separated by 10 nucleotides
BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688
_RS13780
BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536
_RS13785
BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477
_RS13790
BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110
_RS13795
Position (kb)
2875
2876
2877 Strain fitness (log2 ratio)
-2
-1
0
1 at 2874.987 kb on - strand, within BWI76_RS13785 at 2875.108 kb on + strand, within BWI76_RS13785 at 2875.640 kb on - strand, within BWI76_RS13790 at 2875.700 kb on - strand, within BWI76_RS13790 at 2875.855 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.994 kb on + strand, within BWI76_RS13790 at 2876.486 kb on + strand at 2876.494 kb on - strand at 2876.549 kb on + strand at 2876.621 kb on + strand at 2876.639 kb on - strand at 2876.898 kb on + strand, within BWI76_RS13795 at 2877.017 kb on - strand, within BWI76_RS13795 at 2877.091 kb on + strand, within BWI76_RS13795 at 2877.096 kb on + strand, within BWI76_RS13795 at 2877.160 kb on - strand, within BWI76_RS13795 at 2877.164 kb on + strand, within BWI76_RS13795 at 2877.165 kb on - strand, within BWI76_RS13795 at 2877.347 kb on + strand, within BWI76_RS13795
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,874,987 - BWI76_RS13785 0.35 -0.1 2,875,108 + BWI76_RS13785 0.50 -0.0 2,875,640 - BWI76_RS13790 0.11 -0.0 2,875,700 - BWI76_RS13790 0.18 +0.5 2,875,855 + BWI76_RS13790 0.34 +0.9 2,875,877 + BWI76_RS13790 0.36 +1.3 2,875,877 + BWI76_RS13790 0.36 +0.5 2,875,885 - BWI76_RS13790 0.37 +0.0 2,875,885 - BWI76_RS13790 0.37 +0.8 2,875,994 + BWI76_RS13790 0.49 -2.5 2,876,486 + -0.5 2,876,494 - +0.1 2,876,549 + -0.2 2,876,621 + +1.0 2,876,639 - +0.5 2,876,898 + BWI76_RS13795 0.25 +0.1 2,877,017 - BWI76_RS13795 0.33 +0.1 2,877,091 + BWI76_RS13795 0.37 -0.4 2,877,096 + BWI76_RS13795 0.37 +0.2 2,877,160 - BWI76_RS13795 0.41 +0.0 2,877,164 + BWI76_RS13795 0.42 +0.1 2,877,165 - BWI76_RS13795 0.42 -0.0 2,877,347 + BWI76_RS13795 0.53 -0.2
Or see this region's nucleotide sequence