Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12070

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12060 and BWI76_RS12065 are separated by 192 nucleotidesBWI76_RS12065 and BWI76_RS12070 overlap by 1 nucleotidesBWI76_RS12070 and BWI76_RS12075 are separated by 284 nucleotidesBWI76_RS12075 and BWI76_RS12080 are separated by 140 nucleotides BWI76_RS12060: BWI76_RS12060 - putative exodeoxyribonuclease VIII, at 2,534,194 to 2,536,983 _RS12060 BWI76_RS12065: BWI76_RS12065 - hypothetical protein, at 2,537,176 to 2,537,367 _RS12065 BWI76_RS12070: BWI76_RS12070 - hypothetical protein, at 2,537,367 to 2,537,561 _RS12070 BWI76_RS12075: BWI76_RS12075 - regulator, at 2,537,846 to 2,538,406 _RS12075 BWI76_RS12080: BWI76_RS12080 - hypothetical protein, at 2,538,547 to 2,538,777 _RS12080 Position (kb) 2537 2538Strain fitness (log2 ratio) -1 0 1 2at 2536.370 kb on - strand, within BWI76_RS12060at 2536.511 kb on + strand, within BWI76_RS12060at 2536.519 kb on - strand, within BWI76_RS12060at 2536.519 kb on - strand, within BWI76_RS12060at 2536.565 kb on + strand, within BWI76_RS12060at 2536.573 kb on - strand, within BWI76_RS12060at 2536.573 kb on - strand, within BWI76_RS12060at 2536.613 kb on - strand, within BWI76_RS12060at 2536.620 kb on - strand, within BWI76_RS12060at 2536.883 kb on + strandat 2536.958 kb on + strandat 2537.032 kb on + strandat 2537.040 kb on - strandat 2537.174 kb on + strandat 2537.179 kb on + strandat 2537.219 kb on + strand, within BWI76_RS12065at 2537.242 kb on + strand, within BWI76_RS12065at 2537.289 kb on + strand, within BWI76_RS12065at 2537.295 kb on - strand, within BWI76_RS12065at 2537.528 kb on - strand, within BWI76_RS12070at 2537.559 kb on - strandat 2537.608 kb on + strandat 2537.697 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
2,536,370 - BWI76_RS12060 0.78 +0.1
2,536,511 + BWI76_RS12060 0.83 -0.4
2,536,519 - BWI76_RS12060 0.83 -0.3
2,536,519 - BWI76_RS12060 0.83 -0.3
2,536,565 + BWI76_RS12060 0.85 +0.8
2,536,573 - BWI76_RS12060 0.85 +1.6
2,536,573 - BWI76_RS12060 0.85 +0.2
2,536,613 - BWI76_RS12060 0.87 -0.1
2,536,620 - BWI76_RS12060 0.87 +0.1
2,536,883 + +0.1
2,536,958 + -0.1
2,537,032 + +2.2
2,537,040 - -0.7
2,537,174 + +0.0
2,537,179 + -0.4
2,537,219 + BWI76_RS12065 0.22 -0.6
2,537,242 + BWI76_RS12065 0.34 -0.3
2,537,289 + BWI76_RS12065 0.59 +0.4
2,537,295 - BWI76_RS12065 0.62 -0.4
2,537,528 - BWI76_RS12070 0.83 -0.9
2,537,559 - -0.9
2,537,608 + +0.3
2,537,697 + +0.7

Or see this region's nucleotide sequence