Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07875

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07870 and BWI76_RS07875 are separated by 5 nucleotidesBWI76_RS07875 and BWI76_RS07880 are separated by 38 nucleotidesBWI76_RS07880 and BWI76_RS07885 are separated by 11 nucleotides BWI76_RS07870: BWI76_RS07870 - carbohydrate kinase, at 1,670,027 to 1,671,514 _RS07870 BWI76_RS07875: BWI76_RS07875 - dihydrofolate reductase, at 1,671,520 to 1,672,548 _RS07875 BWI76_RS07880: BWI76_RS07880 - PfkB domain-containing protein, at 1,672,587 to 1,673,531 _RS07880 BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544 _RS07885 Position (kb) 1671 1672 1673Strain fitness (log2 ratio) -2 -1 0 1at 1671.163 kb on - strand, within BWI76_RS07870at 1671.190 kb on - strand, within BWI76_RS07870at 1671.200 kb on - strand, within BWI76_RS07870at 1671.417 kb on + strandat 1671.478 kb on - strandat 1671.614 kb on - strandat 1671.682 kb on - strand, within BWI76_RS07875at 1671.999 kb on + strand, within BWI76_RS07875at 1672.036 kb on - strand, within BWI76_RS07875at 1672.102 kb on - strand, within BWI76_RS07875at 1672.234 kb on - strand, within BWI76_RS07875at 1672.789 kb on + strand, within BWI76_RS07880at 1672.994 kb on + strand, within BWI76_RS07880at 1673.002 kb on - strand, within BWI76_RS07880at 1673.186 kb on + strand, within BWI76_RS07880at 1673.186 kb on + strand, within BWI76_RS07880at 1673.278 kb on - strand, within BWI76_RS07880at 1673.524 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,671,163 - BWI76_RS07870 0.76 -0.3
1,671,190 - BWI76_RS07870 0.78 -0.5
1,671,200 - BWI76_RS07870 0.79 +0.2
1,671,417 + +0.2
1,671,478 - -0.6
1,671,614 - -0.6
1,671,682 - BWI76_RS07875 0.16 -1.2
1,671,999 + BWI76_RS07875 0.47 +0.0
1,672,036 - BWI76_RS07875 0.50 -1.0
1,672,102 - BWI76_RS07875 0.57 -2.2
1,672,234 - BWI76_RS07875 0.69 -0.9
1,672,789 + BWI76_RS07880 0.21 -0.6
1,672,994 + BWI76_RS07880 0.43 +0.1
1,673,002 - BWI76_RS07880 0.44 +0.3
1,673,186 + BWI76_RS07880 0.63 +0.0
1,673,186 + BWI76_RS07880 0.63 +0.2
1,673,278 - BWI76_RS07880 0.73 +0.1
1,673,524 - -1.2

Or see this region's nucleotide sequence