Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25215 and AO353_25220 are separated by 79 nucleotides AO353_25220 and AO353_25225 are separated by 57 nucleotides AO353_25225 and AO353_25230 are separated by 30 nucleotides
AO353_25215: AO353_25215 - transcriptional regulator, at 5,563,787 to 5,564,722
_25215
AO353_25220: AO353_25220 - hypothetical protein, at 5,564,802 to 5,565,071
_25220
AO353_25225: AO353_25225 - hypothetical protein, at 5,565,129 to 5,565,398
_25225
AO353_25230: AO353_25230 - ATPase, at 5,565,429 to 5,566,097
_25230
Position (kb) 5564
5565
5566 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5563.804 kb on + strand at 5563.849 kb on + strand at 5563.849 kb on + strand at 5563.956 kb on + strand, within AO353_25215 at 5563.957 kb on - strand, within AO353_25215 at 5563.957 kb on - strand, within AO353_25215 at 5563.981 kb on - strand, within AO353_25215 at 5563.985 kb on - strand, within AO353_25215 at 5564.108 kb on + strand, within AO353_25215 at 5564.108 kb on + strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.165 kb on - strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.234 kb on - strand, within AO353_25215 at 5564.234 kb on - strand, within AO353_25215 at 5564.330 kb on + strand, within AO353_25215 at 5564.331 kb on - strand, within AO353_25215 at 5564.331 kb on - strand, within AO353_25215 at 5564.440 kb on - strand, within AO353_25215 at 5564.614 kb on + strand, within AO353_25215 at 5564.614 kb on + strand, within AO353_25215 at 5564.626 kb on + strand, within AO353_25215 at 5564.626 kb on + strand, within AO353_25215 at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.636 kb on + strand at 5564.637 kb on - strand at 5564.639 kb on + strand at 5564.640 kb on - strand at 5564.716 kb on + strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.803 kb on + strand at 5564.803 kb on + strand at 5564.804 kb on - strand at 5564.804 kb on - strand at 5564.804 kb on - strand at 5564.827 kb on + strand at 5564.827 kb on + strand at 5564.827 kb on + strand at 5564.828 kb on - strand at 5564.828 kb on - strand at 5564.828 kb on - strand at 5564.828 kb on - strand at 5564.917 kb on + strand, within AO353_25220 at 5564.918 kb on - strand, within AO353_25220 at 5564.918 kb on - strand, within AO353_25220 at 5564.962 kb on + strand, within AO353_25220 at 5564.962 kb on + strand, within AO353_25220 at 5564.963 kb on - strand, within AO353_25220 at 5564.963 kb on - strand, within AO353_25220 at 5565.001 kb on - strand, within AO353_25220 at 5565.001 kb on - strand, within AO353_25220 at 5565.071 kb on + strand at 5565.071 kb on + strand at 5565.071 kb on + strand at 5565.071 kb on + strand at 5565.072 kb on - strand at 5565.072 kb on - strand at 5565.072 kb on - strand at 5565.076 kb on + strand at 5565.076 kb on + strand at 5565.077 kb on - strand at 5565.077 kb on - strand at 5565.077 kb on - strand at 5565.077 kb on - strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.086 kb on + strand at 5565.086 kb on + strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.091 kb on - strand at 5565.091 kb on - strand at 5565.091 kb on - strand at 5565.131 kb on - strand at 5565.198 kb on - strand, within AO353_25225 at 5565.198 kb on - strand, within AO353_25225 at 5565.217 kb on + strand, within AO353_25225 at 5565.217 kb on + strand, within AO353_25225 at 5565.218 kb on - strand, within AO353_25225 at 5565.218 kb on - strand, within AO353_25225 at 5565.221 kb on - strand, within AO353_25225 at 5565.221 kb on - strand, within AO353_25225 at 5565.221 kb on - strand, within AO353_25225 at 5565.314 kb on + strand, within AO353_25225 at 5565.315 kb on - strand, within AO353_25225 at 5565.339 kb on + strand, within AO353_25225 at 5565.340 kb on - strand, within AO353_25225 at 5565.344 kb on + strand at 5565.344 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.409 kb on + strand at 5565.409 kb on + strand at 5565.409 kb on + strand at 5565.409 kb on + strand at 5565.410 kb on - strand at 5565.410 kb on - strand at 5565.418 kb on - strand at 5565.434 kb on + strand at 5565.434 kb on + strand at 5565.434 kb on + strand at 5565.619 kb on + strand, within AO353_25230 at 5565.619 kb on + strand, within AO353_25230 at 5565.619 kb on + strand, within AO353_25230 at 5565.620 kb on - strand, within AO353_25230 at 5565.637 kb on + strand, within AO353_25230 at 5565.637 kb on + strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.697 kb on + strand, within AO353_25230 at 5565.697 kb on + strand, within AO353_25230 at 5565.697 kb on + strand, within AO353_25230 at 5565.698 kb on - strand at 5565.698 kb on - strand, within AO353_25230 at 5565.698 kb on - strand, within AO353_25230 at 5565.901 kb on + strand, within AO353_25230 at 5565.901 kb on + strand, within AO353_25230 at 5565.902 kb on - strand, within AO353_25230 at 5565.902 kb on - strand, within AO353_25230 at 5565.914 kb on - strand, within AO353_25230 at 5566.000 kb on - strand, within AO353_25230 at 5566.027 kb on + strand, within AO353_25230 at 5566.028 kb on - strand, within AO353_25230 at 5566.028 kb on - strand, within AO353_25230
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 5,563,804 + -0.2 5,563,849 + -0.5 5,563,849 + -1.7 5,563,956 + AO353_25215 0.18 -2.2 5,563,957 - AO353_25215 0.18 -0.7 5,563,957 - AO353_25215 0.18 -1.7 5,563,981 - AO353_25215 0.21 -1.1 5,563,985 - AO353_25215 0.21 -0.0 5,564,108 + AO353_25215 0.34 +1.2 5,564,108 + AO353_25215 0.34 +0.3 5,564,109 - AO353_25215 0.34 +0.4 5,564,109 - AO353_25215 0.34 -1.2 5,564,109 - AO353_25215 0.34 -0.7 5,564,109 - AO353_25215 0.34 +0.0 5,564,165 - AO353_25215 0.40 -0.8 5,564,233 + AO353_25215 0.48 -0.8 5,564,233 + AO353_25215 0.48 -0.6 5,564,233 + AO353_25215 0.48 +2.3 5,564,233 + AO353_25215 0.48 +0.3 5,564,233 + AO353_25215 0.48 +0.5 5,564,233 + AO353_25215 0.48 -1.5 5,564,233 + AO353_25215 0.48 +3.9 5,564,233 + AO353_25215 0.48 +0.8 5,564,234 - AO353_25215 0.48 -0.2 5,564,234 - AO353_25215 0.48 -1.3 5,564,330 + AO353_25215 0.58 -1.1 5,564,331 - AO353_25215 0.58 -0.2 5,564,331 - AO353_25215 0.58 +0.0 5,564,440 - AO353_25215 0.70 -1.9 5,564,614 + AO353_25215 0.88 +0.7 5,564,614 + AO353_25215 0.88 -0.2 5,564,626 + AO353_25215 0.90 +0.6 5,564,626 + AO353_25215 0.90 +0.1 5,564,630 + +0.2 5,564,630 + +0.8 5,564,630 + -2.0 5,564,630 + +0.6 5,564,630 + -1.3 5,564,630 + -0.1 5,564,630 + -2.2 5,564,630 + +0.2 5,564,630 + +0.1 5,564,630 + -0.5 5,564,631 - +0.2 5,564,631 - +0.3 5,564,631 - +1.0 5,564,631 - +0.2 5,564,631 - -1.0 5,564,636 + -1.2 5,564,637 - +0.1 5,564,639 + +1.6 5,564,640 - +0.3 5,564,716 + +0.5 5,564,717 - +1.3 5,564,717 - +0.2 5,564,717 - -0.7 5,564,717 - +0.2 5,564,803 + -0.2 5,564,803 + -0.4 5,564,804 - -1.0 5,564,804 - -0.2 5,564,804 - +0.1 5,564,827 + +0.8 5,564,827 + +0.9 5,564,827 + -1.6 5,564,828 - -1.0 5,564,828 - -0.4 5,564,828 - +0.7 5,564,828 - +0.0 5,564,917 + AO353_25220 0.43 +0.1 5,564,918 - AO353_25220 0.43 -1.3 5,564,918 - AO353_25220 0.43 -1.5 5,564,962 + AO353_25220 0.59 -2.1 5,564,962 + AO353_25220 0.59 +0.2 5,564,963 - AO353_25220 0.60 -2.0 5,564,963 - AO353_25220 0.60 -0.4 5,565,001 - AO353_25220 0.74 +0.1 5,565,001 - AO353_25220 0.74 -1.1 5,565,071 + -1.7 5,565,071 + -0.4 5,565,071 + -0.2 5,565,071 + -0.5 5,565,072 - -0.3 5,565,072 - -1.5 5,565,072 - -2.4 5,565,076 + +0.4 5,565,076 + +0.1 5,565,077 - +1.2 5,565,077 - -0.8 5,565,077 - -0.6 5,565,077 - -1.5 5,565,078 + -0.7 5,565,078 + -0.4 5,565,078 + +0.3 5,565,078 + -0.4 5,565,078 + -0.5 5,565,078 + -0.5 5,565,079 - +0.2 5,565,079 - -1.5 5,565,079 - -0.2 5,565,079 - -1.7 5,565,079 - -0.2 5,565,079 - -0.4 5,565,079 - +0.6 5,565,079 - +0.6 5,565,086 + -0.7 5,565,086 + +0.2 5,565,087 - +0.2 5,565,087 - +0.2 5,565,087 - -0.5 5,565,087 - -0.7 5,565,087 - -1.2 5,565,088 + -0.1 5,565,088 + +0.3 5,565,088 + -1.6 5,565,088 + -0.6 5,565,088 + +0.3 5,565,088 + -0.1 5,565,088 + +1.3 5,565,088 + -0.2 5,565,088 + +1.3 5,565,089 - -0.0 5,565,089 - +0.0 5,565,089 - +0.3 5,565,089 - -0.7 5,565,089 - -0.7 5,565,089 - -0.5 5,565,089 - -1.0 5,565,089 - -0.1 5,565,089 - -1.3 5,565,090 + -0.1 5,565,090 + -0.1 5,565,090 + +0.2 5,565,090 + +0.5 5,565,090 + -0.0 5,565,090 + -1.2 5,565,090 + -1.4 5,565,090 + -0.0 5,565,090 + -0.2 5,565,090 + -0.5 5,565,090 + -0.5 5,565,091 - -0.2 5,565,091 - -0.1 5,565,091 - -0.8 5,565,131 - -0.2 5,565,198 - AO353_25225 0.26 +1.8 5,565,198 - AO353_25225 0.26 -0.5 5,565,217 + AO353_25225 0.33 -2.0 5,565,217 + AO353_25225 0.33 +0.1 5,565,218 - AO353_25225 0.33 +0.1 5,565,218 - AO353_25225 0.33 +0.3 5,565,221 - AO353_25225 0.34 -0.5 5,565,221 - AO353_25225 0.34 -0.7 5,565,221 - AO353_25225 0.34 -0.6 5,565,314 + AO353_25225 0.69 -0.7 5,565,315 - AO353_25225 0.69 -0.5 5,565,339 + AO353_25225 0.78 +0.6 5,565,340 - AO353_25225 0.78 -0.4 5,565,344 + +0.8 5,565,344 + AO353_25225 0.80 +0.3 5,565,364 + AO353_25225 0.87 +0.2 5,565,364 + AO353_25225 0.87 -1.4 5,565,364 + AO353_25225 0.87 -0.1 5,565,364 + AO353_25225 0.87 -0.5 5,565,364 + AO353_25225 0.87 -0.4 5,565,364 + AO353_25225 0.87 -0.1 5,565,364 + AO353_25225 0.87 -1.3 5,565,364 + AO353_25225 0.87 -0.8 5,565,365 - AO353_25225 0.87 +0.0 5,565,365 - AO353_25225 0.87 -0.1 5,565,365 - AO353_25225 0.87 +0.0 5,565,365 - AO353_25225 0.87 -1.7 5,565,365 - AO353_25225 0.87 -0.2 5,565,365 - AO353_25225 0.87 +0.6 5,565,391 + -0.0 5,565,391 + +0.7 5,565,391 + +0.3 5,565,391 + -1.4 5,565,391 + -0.5 5,565,392 - -0.4 5,565,392 - -1.5 5,565,392 - +0.1 5,565,392 - -0.6 5,565,392 - -2.5 5,565,409 + -1.5 5,565,409 + +0.0 5,565,409 + -0.0 5,565,409 + +0.3 5,565,410 - -0.5 5,565,410 - +0.0 5,565,418 - +1.2 5,565,434 + -0.9 5,565,434 + -1.7 5,565,434 + -0.2 5,565,619 + AO353_25230 0.28 -2.0 5,565,619 + AO353_25230 0.28 -1.2 5,565,619 + AO353_25230 0.28 -0.8 5,565,620 - AO353_25230 0.29 -1.2 5,565,637 + AO353_25230 0.31 -0.3 5,565,637 + AO353_25230 0.31 -0.6 5,565,638 - AO353_25230 0.31 -0.0 5,565,638 - AO353_25230 0.31 +0.3 5,565,638 - AO353_25230 0.31 -0.8 5,565,638 - AO353_25230 0.31 +0.0 5,565,697 + AO353_25230 0.40 -0.2 5,565,697 + AO353_25230 0.40 -0.1 5,565,697 + AO353_25230 0.40 +1.0 5,565,698 - -1.8 5,565,698 - AO353_25230 0.40 -0.0 5,565,698 - AO353_25230 0.40 +1.0 5,565,901 + AO353_25230 0.71 -0.2 5,565,901 + AO353_25230 0.71 -0.3 5,565,902 - AO353_25230 0.71 +0.5 5,565,902 - AO353_25230 0.71 +1.1 5,565,914 - AO353_25230 0.72 +1.1 5,566,000 - AO353_25230 0.85 +0.7 5,566,027 + AO353_25230 0.89 -1.1 5,566,028 - AO353_25230 0.90 -1.1 5,566,028 - AO353_25230 0.90 +1.3
Or see this region's nucleotide sequence