Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22690 and AO353_22695 are separated by 104 nucleotides AO353_22695 and AO353_22700 are separated by 47 nucleotides AO353_22700 and AO353_22705 overlap by 1 nucleotides
AO353_22690: AO353_22690 - amidohydrolase, at 4,967,853 to 4,969,598
_22690
AO353_22695: AO353_22695 - LysR family transcriptional regulator, at 4,969,703 to 4,970,620
_22695
AO353_22700: AO353_22700 - LexA family transcriptional regulator, at 4,970,668 to 4,971,285
_22700
AO353_22705: AO353_22705 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 4,971,285 to 4,971,902
_22705
Position (kb) 4969
4970
4971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4968.760 kb on + strand, within AO353_22690 at 4968.760 kb on + strand, within AO353_22690 at 4968.761 kb on - strand, within AO353_22690 at 4968.761 kb on - strand, within AO353_22690 at 4968.761 kb on - strand, within AO353_22690 at 4968.761 kb on - strand, within AO353_22690 at 4968.761 kb on - strand, within AO353_22690 at 4968.761 kb on - strand at 4969.177 kb on + strand, within AO353_22690 at 4969.178 kb on - strand, within AO353_22690 at 4969.178 kb on - strand, within AO353_22690 at 4969.178 kb on - strand, within AO353_22690 at 4969.178 kb on - strand, within AO353_22690 at 4969.368 kb on - strand, within AO353_22690 at 4969.592 kb on + strand at 4969.593 kb on - strand at 4969.636 kb on + strand at 4969.872 kb on + strand, within AO353_22695 at 4969.872 kb on + strand, within AO353_22695 at 4969.872 kb on + strand, within AO353_22695 at 4969.895 kb on + strand, within AO353_22695 at 4969.895 kb on + strand, within AO353_22695 at 4970.214 kb on - strand, within AO353_22695 at 4970.276 kb on + strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.378 kb on + strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.490 kb on - strand, within AO353_22695 at 4971.019 kb on + strand, within AO353_22700 at 4971.208 kb on + strand, within AO353_22700 at 4971.209 kb on - strand, within AO353_22700 at 4971.209 kb on - strand, within AO353_22700 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.544 kb on - strand, within AO353_22705
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 4,968,760 + AO353_22690 0.52 +0.4 4,968,760 + AO353_22690 0.52 -0.2 4,968,761 - AO353_22690 0.52 -1.9 4,968,761 - AO353_22690 0.52 +0.5 4,968,761 - AO353_22690 0.52 -1.7 4,968,761 - AO353_22690 0.52 -0.3 4,968,761 - AO353_22690 0.52 +0.0 4,968,761 - +2.5 4,969,177 + AO353_22690 0.76 +1.1 4,969,178 - AO353_22690 0.76 -0.3 4,969,178 - AO353_22690 0.76 -0.5 4,969,178 - AO353_22690 0.76 -0.4 4,969,178 - AO353_22690 0.76 -0.2 4,969,368 - AO353_22690 0.87 +0.3 4,969,592 + +1.5 4,969,593 - -0.5 4,969,636 + -0.1 4,969,872 + AO353_22695 0.18 -1.2 4,969,872 + AO353_22695 0.18 -1.7 4,969,872 + AO353_22695 0.18 -2.1 4,969,895 + AO353_22695 0.21 -0.4 4,969,895 + AO353_22695 0.21 +0.0 4,970,214 - AO353_22695 0.56 -1.6 4,970,276 + AO353_22695 0.62 +1.2 4,970,277 - AO353_22695 0.63 -1.8 4,970,277 - AO353_22695 0.63 -0.1 4,970,277 - AO353_22695 0.63 -0.9 4,970,277 - AO353_22695 0.63 -2.0 4,970,277 - AO353_22695 0.63 -0.9 4,970,378 + AO353_22695 0.74 -0.4 4,970,379 - AO353_22695 0.74 -1.3 4,970,379 - AO353_22695 0.74 -1.3 4,970,379 - AO353_22695 0.74 -0.6 4,970,490 - AO353_22695 0.86 -2.1 4,971,019 + AO353_22700 0.57 +0.0 4,971,208 + AO353_22700 0.87 -0.9 4,971,209 - AO353_22700 0.88 -0.7 4,971,209 - AO353_22700 0.88 -0.4 4,971,543 + AO353_22705 0.42 -0.8 4,971,543 + AO353_22705 0.42 -2.4 4,971,543 + AO353_22705 0.42 -1.0 4,971,543 + AO353_22705 0.42 -0.4 4,971,543 + AO353_22705 0.42 +0.8 4,971,543 + AO353_22705 0.42 -1.0 4,971,543 + AO353_22705 0.42 +0.4 4,971,544 - AO353_22705 0.42 -0.9
Or see this region's nucleotide sequence