Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21625 and AO353_21630 are separated by 168 nucleotides AO353_21630 and AO353_21635 are separated by 81 nucleotides AO353_21635 and AO353_21640 overlap by 4 nucleotides AO353_21640 and AO353_21645 are separated by 11 nucleotides
AO353_21625: AO353_21625 - Fe/S biogenesis protein NfuA, at 4,742,618 to 4,743,202
_21625
AO353_21630: AO353_21630 - precorrin-4 C11-methyltransferase, at 4,743,371 to 4,744,117
_21630
AO353_21635: AO353_21635 - cobalamin biosynthesis protein CobE, at 4,744,199 to 4,744,612
_21635
AO353_21640: AO353_21640 - cobalt transporter, at 4,744,609 to 4,745,310
_21640
AO353_21645: AO353_21645 - cobalt transporter, at 4,745,322 to 4,745,513
_21645
Position (kb) 4744
4745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4743.200 kb on + strand at 4743.200 kb on + strand at 4743.200 kb on + strand at 4743.200 kb on + strand at 4743.200 kb on + strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.201 kb on - strand at 4743.381 kb on + strand at 4743.467 kb on - strand, within AO353_21630 at 4743.996 kb on - strand, within AO353_21630 at 4744.008 kb on - strand, within AO353_21630 at 4744.008 kb on - strand, within AO353_21630 at 4744.023 kb on + strand, within AO353_21630 at 4744.023 kb on + strand, within AO353_21630 at 4744.107 kb on + strand at 4744.107 kb on + strand at 4744.107 kb on + strand at 4744.108 kb on - strand at 4744.108 kb on - strand at 4744.236 kb on + strand at 4744.237 kb on - strand at 4744.320 kb on + strand, within AO353_21635 at 4744.374 kb on + strand, within AO353_21635 at 4744.493 kb on + strand, within AO353_21635 at 4744.493 kb on + strand at 4744.493 kb on + strand, within AO353_21635 at 4744.494 kb on - strand, within AO353_21635 at 4744.494 kb on - strand, within AO353_21635 at 4745.073 kb on + strand, within AO353_21640 at 4745.198 kb on + strand, within AO353_21640 at 4745.298 kb on + strand at 4745.299 kb on - strand at 4745.299 kb on - strand at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.405 kb on - strand, within AO353_21645 at 4745.405 kb on - strand, within AO353_21645 at 4745.556 kb on + strand at 4745.556 kb on + strand at 4745.556 kb on + strand at 4745.556 kb on + strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 4,743,200 + -2.0 4,743,200 + +0.7 4,743,200 + +0.9 4,743,200 + -1.2 4,743,200 + -2.7 4,743,201 - +1.2 4,743,201 - +0.1 4,743,201 - +0.0 4,743,201 - -1.5 4,743,201 - -1.2 4,743,201 - +1.0 4,743,201 - -1.0 4,743,201 - -0.5 4,743,201 - +1.3 4,743,201 - -0.1 4,743,201 - +1.5 4,743,201 - -0.4 4,743,381 + +1.1 4,743,467 - AO353_21630 0.13 -1.6 4,743,996 - AO353_21630 0.84 -1.6 4,744,008 - AO353_21630 0.85 -1.3 4,744,008 - AO353_21630 0.85 -2.9 4,744,023 + AO353_21630 0.87 -2.5 4,744,023 + AO353_21630 0.87 -1.1 4,744,107 + +0.0 4,744,107 + -1.0 4,744,107 + -3.1 4,744,108 - -1.6 4,744,108 - +0.0 4,744,236 + -1.9 4,744,237 - -2.1 4,744,320 + AO353_21635 0.29 -1.9 4,744,374 + AO353_21635 0.42 -0.3 4,744,493 + AO353_21635 0.71 -0.8 4,744,493 + -0.7 4,744,493 + AO353_21635 0.71 -1.0 4,744,494 - AO353_21635 0.71 -0.4 4,744,494 - AO353_21635 0.71 -0.9 4,745,073 + AO353_21640 0.66 -0.2 4,745,198 + AO353_21640 0.84 -0.5 4,745,298 + -1.9 4,745,299 - -0.5 4,745,299 - +0.5 4,745,404 + AO353_21645 0.43 -0.2 4,745,404 + AO353_21645 0.43 +0.5 4,745,404 + AO353_21645 0.43 -0.1 4,745,404 + AO353_21645 0.43 -1.4 4,745,404 + AO353_21645 0.43 -2.0 4,745,404 + AO353_21645 0.43 -1.2 4,745,404 + AO353_21645 0.43 -0.4 4,745,405 - AO353_21645 0.43 +2.2 4,745,405 - AO353_21645 0.43 -1.0 4,745,556 + +1.6 4,745,556 + +0.4 4,745,556 + -0.9 4,745,556 + +0.3 4,745,557 - -2.2 4,745,557 - +0.5 4,745,557 - +0.0 4,745,557 - -0.6 4,745,557 - +0.6 4,745,557 - -1.3
Or see this region's nucleotide sequence