Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08685

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
1,906,850	+		AO353_08680	0.67	-1.4
1,906,850	+		AO353_08680	0.67	-0.8
1,906,851	-		AO353_08680	0.67	-0.8
1,906,851	-		AO353_08680	0.67	+0.7
1,906,851	-		AO353_08680	0.67	+0.5
1,906,851	-		AO353_08680	0.67	+0.7
1,907,010	+		AO353_08680	0.79	-1.4
1,907,010	+		AO353_08680	0.79	-0.9
1,907,049	-		AO353_08680	0.82	-0.1
1,907,049	-		AO353_08680	0.82	+1.5
1,907,077	-		AO353_08680	0.84	+0.7
1,907,082	+		AO353_08680	0.84	+0.2
1,907,082	+		AO353_08680	0.84	+1.3
1,907,082	+		AO353_08680	0.84	+0.7
1,907,083	-		AO353_08680	0.84	-0.6
1,907,083	-		AO353_08680	0.84	+0.3
1,907,093	+		AO353_08680	0.85	-1.7
1,907,093	+		AO353_08680	0.85	+0.8
1,907,180	+				-0.1
1,907,180	+				+0.4
1,907,180	+				-0.4
1,907,180	+				-1.4
1,907,180	+				-0.9
1,907,180	+				-0.9
1,907,181	-				-0.4
1,907,181	-				-0.9
1,907,181	-				+0.5
1,907,181	-				-0.1
1,907,187	+				-0.8
1,907,208	+				+1.0
1,907,208	+				+0.4
1,907,208	+				+0.8
1,907,208	+				-0.2
1,907,208	+				+0.7
1,907,209	-				-0.9
1,907,209	-				+0.1
1,907,209	-				+0.9
1,907,209	-				-0.2
1,907,286	+				-0.2
1,907,286	+				-1.1
1,907,286	+				-0.2
1,907,286	+				-0.3
1,907,286	+				+0.4
1,907,286	+				+0.5
1,907,286	+				+1.4
1,907,286	+				-0.1
1,907,286	+				-0.2
1,907,286	+				+0.3
1,907,286	+				-0.6
1,907,286	+				+1.1
1,907,286	+				-2.2
1,907,286	+				-0.0
1,907,287	-				+1.5
1,907,287	-				+0.3
1,907,287	-				-0.4
1,907,287	-				-1.4
1,907,287	-				+0.9
1,907,287	-				+0.4
1,907,287	-				-0.3
1,907,287	-				+0.9
1,907,287	-				+0.9
1,907,305	+				-0.6
1,907,305	+				-0.5
1,907,305	+				+1.3
1,907,306	-				+2.0
1,907,306	-				+0.6
1,907,306	-				-0.2
1,907,306	-				+0.3
1,907,306	-				-0.2
1,907,306	-				-0.5
1,907,306	-				+0.0
1,907,306	-				+0.9
1,907,306	-				-0.3
1,907,306	-				+0.8
1,907,391	-				+0.7
1,907,401	+				-0.4
1,907,402	-				+1.0
1,907,402	-				-0.3
1,907,415	+				-0.3
1,907,415	+				+0.8
1,907,416	-				+0.1
1,907,428	+				-1.3
1,907,428	+				+0.6
1,907,429	-				-1.3
1,907,429	-				-1.8
1,907,582	+				+1.3
1,907,582	+				+1.0
1,907,583	-				+0.7
1,907,620	+				+0.5
1,907,620	+				+0.4
1,907,620	+				-0.4
1,907,620	+				-1.4
1,907,630	+				+0.7
1,907,630	+				-0.4
1,907,630	+				+1.8
1,907,630	+				-0.8
1,907,630	+				+1.0
1,907,630	+				-0.0
1,907,631	-				+0.8
1,907,631	-				-0.7
1,907,631	-				-0.9
1,907,631	-				+0.5
1,907,631	-				+0.4
1,907,631	-				+2.1
1,907,631	-				+0.7
1,907,631	-				-0.5
1,907,649	+				+0.2
1,907,649	+				-1.5
1,907,649	+				-2.2
1,907,649	+				+0.2
1,907,649	+				-0.4
1,907,650	-				+1.0
1,907,650	-				+0.2
1,907,650	-				+1.0
1,907,650	-				-0.2
1,907,650	-				+0.0
1,907,704	+				-0.5
1,907,705	-				-2.0
1,907,724	+				-1.2
1,907,783	+				-1.7
1,907,783	+				-0.5
1,907,783	+				+1.5
1,907,783	+				-1.4
1,907,784	-				+0.1
1,907,784	-				+0.6
1,907,784	-				+0.7
1,907,784	-				-0.8
1,907,796	+				-0.7
1,907,797	-				+0.6
1,907,799	+				+0.2
1,907,799	+				-0.9
1,907,800	-				+1.5
1,907,800	-				+0.2
1,907,815	+				+1.2
1,907,815	+				-0.2
1,907,829	+				-0.1
1,907,829	+				-1.0
1,907,857	+				-1.4
1,907,857	+				-1.4
1,907,858	-				-1.6
1,907,858	-				-0.6
1,907,865	+				-0.5
1,907,865	+				-0.6
1,907,865	+				-0.8
1,907,865	+				-1.4
1,907,865	+				-0.1
1,907,866	-				-1.3
1,907,866	-				-1.4
1,907,866	-				-2.4
1,907,866	-				-0.0
1,907,866	-				-0.5
1,907,866	-				-0.6
1,907,866	-				-0.9
1,907,866	-				+0.1
1,907,866	-				-0.1
1,907,871	+				-0.9
1,907,871	+				-1.0
1,907,871	+				-1.3
1,907,871	+				-0.8
1,907,871	+				+0.0
1,907,871	+				-1.9
1,907,871	+				-1.4
1,907,871	+				-2.2
1,907,872	-				-1.6
1,907,872	-				+0.2
1,908,099	+		AO353_08685	0.21	-1.8
1,908,099	+		AO353_08685	0.21	-1.8
1,908,100	-		AO353_08685	0.21	-2.9
1,908,100	-		AO353_08685	0.21	-1.8
1,908,100	-		AO353_08685	0.21	-2.0
1,908,264	-		AO353_08685	0.34	-0.6
1,908,264	-		AO353_08685	0.34	-0.6
1,908,264	-		AO353_08685	0.34	-2.2
1,908,264	-		AO353_08685	0.34	-1.7
1,908,266	+		AO353_08685	0.34	-1.9
1,908,266	+		AO353_08685	0.34	-1.2
1,908,267	-		AO353_08685	0.34	-2.0
1,908,267	-		AO353_08685	0.34	-2.2
1,908,267	-		AO353_08685	0.34	-0.9
1,908,267	-		AO353_08685	0.34	-1.2
1,908,267	-		AO353_08685	0.34	-2.3
1,908,267	-		AO353_08685	0.34	-1.1
1,908,348	+		AO353_08685	0.40	-1.0
1,908,348	+		AO353_08685	0.40	-0.8
1,908,349	-		AO353_08685	0.40	-1.6
1,908,349	-		AO353_08685	0.40	-2.6
1,908,349	-		AO353_08685	0.40	-3.0
1,908,349	-		AO353_08685	0.40	-0.6
1,908,359	-		AO353_08685	0.41	-2.1
1,908,359	-		AO353_08685	0.41	-1.5
1,908,359	-		AO353_08685	0.41	-3.5
1,908,359	-		AO353_08685	0.41	-1.9
1,908,420	+		AO353_08685	0.46	-1.3
1,908,420	+		AO353_08685	0.46	-1.4
1,908,421	-		AO353_08685	0.46	-2.8
1,908,421	-		AO353_08685	0.46	+1.0
1,908,629	+		AO353_08685	0.62	-0.2
1,908,629	+		AO353_08685	0.62	-0.3
1,908,629	+		AO353_08685	0.62	+0.3
1,908,629	+		AO353_08685	0.62	-0.8
1,908,629	+		AO353_08685	0.62	-2.5
1,908,629	+		AO353_08685	0.62	-2.7
1,908,629	+		AO353_08685	0.62	-1.3
1,908,630	-		AO353_08685	0.62	+0.5
1,908,630	-		AO353_08685	0.62	-0.6
1,908,630	-		AO353_08685	0.62	-0.9
1,908,630	-		AO353_08685	0.62	-2.1
1,908,630	-		AO353_08685	0.62	-2.2
1,908,630	-		AO353_08685	0.62	+0.2
1,908,630	-		AO353_08685	0.62	-1.6
1,908,630	-		AO353_08685	0.62	-2.0
1,908,630	-		AO353_08685	0.62	-1.0
1,908,634	+		AO353_08685	0.62	+0.8
1,908,710	-		AO353_08685	0.68	-0.8
1,908,898	-		AO353_08685	0.82	-0.9
1,908,898	-		AO353_08685	0.82	-1.3
1,908,898	-		AO353_08685	0.82	-2.2
1,908,963	-		AO353_08685	0.87	-1.9
1,909,086	+				-0.8
1,909,086	+				-1.0
1,909,086	+				+0.7
1,909,086	+				-1.5
1,909,087	-				-1.9
1,909,087	-				-2.2
1,909,087	-				-2.8
1,909,087	-				-0.0
1,909,111	+				-1.3
1,909,116	+				-1.2
1,909,116	+				-2.7
1,909,117	-				+1.3
1,909,117	-				-2.0
1,909,117	-				-1.4
1,909,126	+				-1.8
1,909,126	+				+2.0
1,909,126	+				-2.0
1,909,126	+				-1.7
1,909,127	-				-0.8
1,909,141	+				-1.2
1,909,142	-				+0.8
1,909,148	+				-2.1
1,909,148	+				-2.6
1,909,149	-				+0.2
1,909,149	-				-0.7
1,909,149	-				-1.3
1,909,149	-				+0.5
1,909,149	-				+0.0
1,909,149	-				+0.8
1,909,149	-				-0.2
1,909,149	-				+0.7
1,909,158	+				-2.5
1,909,240	+				+1.1
1,909,240	+				+1.1
1,909,241	-				-0.4
1,909,241	-				-0.8
1,909,241	-				+0.3
1,909,241	-				-0.9
1,909,241	-				-0.5
1,909,241	-				-1.8
1,909,241	-				-3.5
1,909,241	-				-0.3
1,909,263	+				-0.8
1,909,263	+				-2.2
1,909,264	-				+1.5
1,909,264	-				+1.0
1,909,284	+				-0.1
1,909,284	+				+0.8
1,909,284	+				+0.4
1,909,285	-				+1.2
1,909,285	-				+1.5
1,909,285	-				+0.1
1,909,285	-				+0.4
1,909,285	-				-2.0
1,909,304	+				+0.2
1,909,304	+				+0.7
1,909,304	+				-0.3
1,909,304	+				+1.3
1,909,304	+				+2.9
1,909,304	+				-1.5
1,909,305	-				+0.2
1,909,305	-				-1.1
1,909,305	-				-0.7
1,909,305	-				+0.3
1,909,305	-				-1.1
1,909,305	-				-1.0
1,909,305	-				+1.2
1,909,305	-				-1.0
1,909,305	-				+0.3
1,909,307	+				-0.8
1,909,307	+				-0.1
1,909,307	+				+1.1
1,909,307	+				-0.3
1,909,307	+				+0.2
1,909,307	+				-2.3
1,909,307	+				+1.4
1,909,307	+				+0.9
1,909,307	+				+0.2
1,909,307	+				+1.5
1,909,307	+				+0.8
1,909,307	+				+0.9
1,909,307	+				+0.1
1,909,308	-				+0.0
1,909,308	-				-0.5
1,909,308	-				-2.2
1,909,308	-				+1.6
1,909,308	-				-0.5
1,909,308	-				-0.6
1,909,308	-				-1.5
1,909,308	-				+0.7
1,909,308	-				+0.4
1,909,308	-				+0.2
1,909,308	-				+0.6
1,909,308	-				-0.5
1,909,308	-				-0.5
1,909,308	-				+1.2
1,909,308	-				+1.0
1,909,308	-				-0.5
1,909,318	+				+0.0
1,909,318	+				-2.1
1,909,345	-				-0.2
1,909,345	-				-0.2
1,909,345	-				-0.3
1,909,345	-				-0.3
1,909,419	+		AO353_08690	0.13	-0.7
1,909,419	+		AO353_08690	0.13	-2.0
1,909,419	+		AO353_08690	0.13	+0.6
1,909,420	-		AO353_08690	0.13	+0.6
1,909,442	+		AO353_08690	0.15	+0.2
1,909,443	-		AO353_08690	0.15	-1.3
1,909,542	+		AO353_08690	0.24	+0.5
1,909,543	-		AO353_08690	0.24	+1.5
1,909,553	+		AO353_08690	0.25	+0.3
1,909,553	+		AO353_08690	0.25	+1.0
1,909,553	+		AO353_08690	0.25	-2.2
1,909,554	-		AO353_08690	0.25	-0.3
1,909,554	-		AO353_08690	0.25	-1.2
1,909,554	-		AO353_08690	0.25	+0.5
1,909,554	-		AO353_08690	0.25	-0.7
1,909,554	-		AO353_08690	0.25	+0.4
1,909,554	-		AO353_08690	0.25	+0.4
1,909,778	+		AO353_08690	0.45	+1.4
1,909,778	+		AO353_08690	0.45	-0.8
1,909,888	+		AO353_08690	0.54	-0.6
1,909,888	+		AO353_08690	0.54	+0.6
1,909,888	+		AO353_08690	0.54	+0.1
1,909,889	-		AO353_08690	0.54	-0.6
1,909,889	-		AO353_08690	0.54	-0.3
1,909,894	+		AO353_08690	0.55	-0.8
1,909,894	+		AO353_08690	0.55	+0.6
1,909,894	+		AO353_08690	0.55	-1.3
1,909,894	+		AO353_08690	0.55	-1.0
1,909,895	-		AO353_08690	0.55	+1.7
1,909,895	-		AO353_08690	0.55	-0.3
1,909,895	-		AO353_08690	0.55	+0.8
1,909,895	-		AO353_08690	0.55	-0.6