Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03390

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03380 and AO353_03385 are separated by 3 nucleotidesAO353_03385 and AO353_03390 overlap by 8 nucleotidesAO353_03390 and AO353_03395 are separated by 122 nucleotides AO353_03380: AO353_03380 - sugar ABC transporter ATP-binding protein, at 719,615 to 720,775 _03380 AO353_03385: AO353_03385 - sugar ABC transporter permease, at 720,779 to 721,624 _03385 AO353_03390: AO353_03390 - sugar ABC transporter permease, at 721,617 to 722,525 _03390 AO353_03395: AO353_03395 - sugar ABC transporter substrate-binding protein, at 722,648 to 723,955 _03395 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.758 kb on + strandat 720.759 kb on - strandat 720.759 kb on - strandat 720.759 kb on - strandat 720.759 kb on - strandat 720.780 kb on + strandat 720.781 kb on - strandat 720.819 kb on + strandat 720.819 kb on + strandat 720.819 kb on + strandat 720.819 kb on + strandat 720.819 kb on + strandat 720.819 kb on + strandat 720.819 kb on + strandat 720.820 kb on - strandat 720.820 kb on - strandat 720.820 kb on - strandat 720.820 kb on - strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.833 kb on + strandat 720.834 kb on - strandat 720.834 kb on - strandat 720.834 kb on - strandat 720.834 kb on - strandat 720.834 kb on - strandat 720.834 kb on - strandat 720.837 kb on + strandat 720.837 kb on + strandat 720.837 kb on + strandat 720.837 kb on + strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.838 kb on - strandat 720.891 kb on + strand, within AO353_03385at 720.891 kb on + strand, within AO353_03385at 720.891 kb on + strand, within AO353_03385at 720.891 kb on + strand, within AO353_03385at 720.891 kb on + strand, within AO353_03385at 720.891 kb on + strand, within AO353_03385at 720.891 kb on + strand, within AO353_03385at 720.892 kb on - strand, within AO353_03385at 720.892 kb on - strand, within AO353_03385at 720.892 kb on - strand, within AO353_03385at 721.131 kb on + strand, within AO353_03385at 721.131 kb on + strand, within AO353_03385at 721.131 kb on + strand, within AO353_03385at 721.132 kb on - strand, within AO353_03385at 721.132 kb on - strand, within AO353_03385at 721.132 kb on - strand, within AO353_03385at 721.132 kb on - strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.134 kb on + strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.135 kb on - strand, within AO353_03385at 721.170 kb on + strand, within AO353_03385at 721.335 kb on + strand, within AO353_03385at 721.335 kb on + strand, within AO353_03385at 721.336 kb on - strand, within AO353_03385at 721.336 kb on - strand, within AO353_03385at 721.336 kb on - strand, within AO353_03385at 721.407 kb on + strand, within AO353_03385at 721.407 kb on + strand, within AO353_03385at 721.415 kb on + strand, within AO353_03385at 721.542 kb on + strandat 721.542 kb on + strandat 721.542 kb on + strandat 721.543 kb on - strandat 721.572 kb on + strandat 721.572 kb on + strandat 721.572 kb on + strandat 721.573 kb on - strandat 721.573 kb on - strandat 721.573 kb on - strandat 721.573 kb on - strandat 721.618 kb on + strandat 721.618 kb on + strandat 721.619 kb on - strandat 721.619 kb on - strandat 721.648 kb on + strandat 721.649 kb on - strandat 721.649 kb on - strandat 721.655 kb on - strandat 721.655 kb on - strandat 721.655 kb on - strandat 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.744 kb on + strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.745 kb on - strand, within AO353_03390at 721.774 kb on + strand, within AO353_03390at 721.775 kb on - strand, within AO353_03390at 721.775 kb on - strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 721.894 kb on + strand, within AO353_03390at 722.026 kb on + strand, within AO353_03390at 722.026 kb on + strand, within AO353_03390at 722.027 kb on - strand, within AO353_03390at 722.027 kb on - strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.176 kb on + strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.177 kb on - strand, within AO353_03390at 722.332 kb on + strand, within AO353_03390at 722.332 kb on + strand, within AO353_03390at 722.332 kb on + strand, within AO353_03390at 722.332 kb on + strand, within AO353_03390at 722.332 kb on + strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.333 kb on - strand, within AO353_03390at 722.356 kb on + strand, within AO353_03390at 722.356 kb on + strand, within AO353_03390at 722.356 kb on + strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.357 kb on - strand, within AO353_03390at 722.410 kb on + strand, within AO353_03390at 722.410 kb on + strand, within AO353_03390at 722.410 kb on + strand, within AO353_03390at 722.410 kb on + strand, within AO353_03390at 722.410 kb on + strand, within AO353_03390at 722.411 kb on - strand, within AO353_03390at 722.411 kb on - strand, within AO353_03390at 722.411 kb on - strand, within AO353_03390at 722.416 kb on + strand, within AO353_03390at 722.417 kb on - strand, within AO353_03390at 722.417 kb on - strand, within AO353_03390at 722.417 kb on - strand, within AO353_03390at 722.574 kb on - strandat 722.574 kb on - strandat 722.574 kb on - strandat 722.649 kb on + strandat 723.033 kb on + strand, within AO353_03395at 723.033 kb on + strand, within AO353_03395at 723.033 kb on + strand, within AO353_03395at 723.034 kb on - strand, within AO353_03395at 723.075 kb on + strand, within AO353_03395at 723.076 kb on - strand, within AO353_03395at 723.076 kb on - strand, within AO353_03395at 723.076 kb on - strand, within AO353_03395at 723.213 kb on + strand, within AO353_03395at 723.213 kb on + strand, within AO353_03395at 723.213 kb on + strand, within AO353_03395at 723.304 kb on - strand, within AO353_03395at 723.423 kb on + strand, within AO353_03395at 723.423 kb on + strand, within AO353_03395at 723.423 kb on + strand, within AO353_03395at 723.423 kb on + strand, within AO353_03395at 723.423 kb on + strand, within AO353_03395at 723.424 kb on - strand, within AO353_03395at 723.424 kb on - strand, within AO353_03395at 723.424 kb on - strand, within AO353_03395at 723.424 kb on - strand, within AO353_03395at 723.424 kb on - strand, within AO353_03395at 723.424 kb on - strand, within AO353_03395

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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720,758 + -2.7
720,759 - +0.2
720,759 - -1.0
720,759 - -0.1
720,759 - -1.3
720,780 + +1.2
720,781 - +0.3
720,819 + -2.9
720,819 + -0.1
720,819 + +1.0
720,819 + -1.1
720,819 + -2.9
720,819 + -1.8
720,819 + -0.5
720,820 - -0.8
720,820 - -1.3
720,820 - +0.6
720,820 - -0.3
720,833 + +0.3
720,833 + -1.0
720,833 + -0.9
720,833 + -0.6
720,833 + +0.3
720,833 + -1.0
720,833 + -0.1
720,833 + -2.5
720,833 + -0.5
720,834 - -2.7
720,834 - -1.3
720,834 - -2.5
720,834 - -2.0
720,834 - -1.0
720,834 - -1.3
720,837 + -2.2
720,837 + -1.0
720,837 + -2.1
720,837 + -1.2
720,838 - -1.2
720,838 - -2.9
720,838 - -3.0
720,838 - +0.4
720,838 - -1.6
720,838 - -0.1
720,838 - -1.5
720,838 - -1.6
720,891 + AO353_03385 0.13 -1.0
720,891 + AO353_03385 0.13 -2.7
720,891 + AO353_03385 0.13 -2.5
720,891 + AO353_03385 0.13 +0.3
720,891 + AO353_03385 0.13 +0.5
720,891 + AO353_03385 0.13 -0.8
720,891 + AO353_03385 0.13 -1.3
720,892 - AO353_03385 0.13 -1.4
720,892 - AO353_03385 0.13 -1.0
720,892 - AO353_03385 0.13 -1.4
721,131 + AO353_03385 0.42 -2.3
721,131 + AO353_03385 0.42 -1.0
721,131 + AO353_03385 0.42 -2.6
721,132 - AO353_03385 0.42 -1.1
721,132 - AO353_03385 0.42 +0.5
721,132 - AO353_03385 0.42 +0.7
721,132 - AO353_03385 0.42 -2.1
721,134 + AO353_03385 0.42 -0.6
721,134 + AO353_03385 0.42 -2.5
721,134 + AO353_03385 0.42 -1.7
721,134 + AO353_03385 0.42 -1.0
721,134 + AO353_03385 0.42 -3.2
721,134 + AO353_03385 0.42 +0.0
721,134 + AO353_03385 0.42 -2.0
721,134 + AO353_03385 0.42 -2.0
721,134 + AO353_03385 0.42 -0.1
721,134 + AO353_03385 0.42 -1.5
721,135 - AO353_03385 0.42 +0.3
721,135 - AO353_03385 0.42 -1.2
721,135 - AO353_03385 0.42 -0.5
721,135 - AO353_03385 0.42 -2.4
721,135 - AO353_03385 0.42 -0.5
721,135 - AO353_03385 0.42 -0.3
721,135 - AO353_03385 0.42 -1.5
721,135 - AO353_03385 0.42 -0.4
721,135 - AO353_03385 0.42 +2.0
721,135 - AO353_03385 0.42 -0.5
721,135 - AO353_03385 0.42 -1.7
721,135 - AO353_03385 0.42 -1.8
721,135 - AO353_03385 0.42 -0.5
721,170 + AO353_03385 0.46 +0.0
721,335 + AO353_03385 0.66 -1.3
721,335 + AO353_03385 0.66 -1.0
721,336 - AO353_03385 0.66 -1.1
721,336 - AO353_03385 0.66 -0.5
721,336 - AO353_03385 0.66 +0.5
721,407 + AO353_03385 0.74 -2.0
721,407 + AO353_03385 0.74 +0.0
721,415 + AO353_03385 0.75 -0.3
721,542 + -0.1
721,542 + -1.7
721,542 + -1.3
721,543 - -1.3
721,572 + -0.9
721,572 + +1.5
721,572 + -0.6
721,573 - -1.9
721,573 - -1.8
721,573 - -1.2
721,573 - +0.1
721,618 + -0.6
721,618 + -0.6
721,619 - -3.0
721,619 - -0.7
721,648 + -1.0
721,649 - -0.8
721,649 - -0.8
721,655 - -1.0
721,655 - -0.3
721,655 - -1.4
721,744 + AO353_03390 0.14 -0.3
721,744 + AO353_03390 0.14 -1.4
721,744 + AO353_03390 0.14 -1.1
721,744 + AO353_03390 0.14 -2.0
721,744 + AO353_03390 0.14 -1.7
721,744 + AO353_03390 0.14 -0.9
721,744 + AO353_03390 0.14 -1.9
721,744 + AO353_03390 0.14 -0.9
721,744 + AO353_03390 0.14 -1.5
721,745 - AO353_03390 0.14 -1.9
721,745 - AO353_03390 0.14 -1.2
721,745 - AO353_03390 0.14 +0.0
721,745 - AO353_03390 0.14 -2.7
721,745 - AO353_03390 0.14 +0.3
721,745 - AO353_03390 0.14 -1.4
721,745 - AO353_03390 0.14 +0.0
721,745 - AO353_03390 0.14 -2.2
721,774 + AO353_03390 0.17 -1.8
721,775 - AO353_03390 0.17 -1.1
721,775 - AO353_03390 0.17 -2.0
721,894 + AO353_03390 0.30 -1.5
721,894 + AO353_03390 0.30 -0.9
721,894 + AO353_03390 0.30 -3.1
721,894 + AO353_03390 0.30 -0.5
721,894 + AO353_03390 0.30 -1.4
721,894 + AO353_03390 0.30 +0.0
721,894 + AO353_03390 0.30 +0.0
721,894 + AO353_03390 0.30 -1.0
722,026 + AO353_03390 0.45 -1.1
722,026 + AO353_03390 0.45 -0.7
722,027 - AO353_03390 0.45 -1.3
722,027 - AO353_03390 0.45 -0.4
722,176 + AO353_03390 0.61 -2.7
722,176 + AO353_03390 0.61 -0.6
722,176 + AO353_03390 0.61 -0.3
722,176 + AO353_03390 0.61 -0.6
722,176 + AO353_03390 0.61 -2.5
722,176 + AO353_03390 0.61 -1.1
722,176 + AO353_03390 0.61 -2.1
722,176 + AO353_03390 0.61 -0.8
722,176 + AO353_03390 0.61 -0.8
722,177 - AO353_03390 0.62 +1.6
722,177 - AO353_03390 0.62 -0.8
722,177 - AO353_03390 0.62 +0.1
722,177 - AO353_03390 0.62 -1.3
722,177 - AO353_03390 0.62 -1.4
722,177 - AO353_03390 0.62 +0.1
722,177 - AO353_03390 0.62 +0.8
722,177 - AO353_03390 0.62 -2.7
722,332 + AO353_03390 0.79 +0.5
722,332 + AO353_03390 0.79 -1.1
722,332 + AO353_03390 0.79 +0.3
722,332 + AO353_03390 0.79 -1.7
722,332 + AO353_03390 0.79 -1.0
722,333 - AO353_03390 0.79 -1.1
722,333 - AO353_03390 0.79 -2.2
722,333 - AO353_03390 0.79 -1.4
722,333 - AO353_03390 0.79 -1.3
722,333 - AO353_03390 0.79 -0.5
722,333 - AO353_03390 0.79 -1.1
722,333 - AO353_03390 0.79 -1.5
722,333 - AO353_03390 0.79 -1.7
722,356 + AO353_03390 0.81 -1.7
722,356 + AO353_03390 0.81 -2.8
722,356 + AO353_03390 0.81 -1.4
722,357 - AO353_03390 0.81 -1.6
722,357 - AO353_03390 0.81 -0.2
722,357 - AO353_03390 0.81 -0.4
722,357 - AO353_03390 0.81 +0.7
722,357 - AO353_03390 0.81 -1.7
722,357 - AO353_03390 0.81 -0.7
722,357 - AO353_03390 0.81 -1.3
722,410 + AO353_03390 0.87 -1.2
722,410 + AO353_03390 0.87 +1.2
722,410 + AO353_03390 0.87 -0.4
722,410 + AO353_03390 0.87 -0.8
722,410 + AO353_03390 0.87 -1.3
722,411 - AO353_03390 0.87 -0.5
722,411 - AO353_03390 0.87 -0.5
722,411 - AO353_03390 0.87 -3.2
722,416 + AO353_03390 0.88 -2.1
722,417 - AO353_03390 0.88 -1.4
722,417 - AO353_03390 0.88 -1.9
722,417 - AO353_03390 0.88 -2.0
722,574 - -1.4
722,574 - -1.0
722,574 - -0.9
722,649 + +0.8
723,033 + AO353_03395 0.29 -0.6
723,033 + AO353_03395 0.29 -1.5
723,033 + AO353_03395 0.29 -1.7
723,034 - AO353_03395 0.30 -2.0
723,075 + AO353_03395 0.33 -1.9
723,076 - AO353_03395 0.33 -1.5
723,076 - AO353_03395 0.33 +0.2
723,076 - AO353_03395 0.33 +0.6
723,213 + AO353_03395 0.43 -0.2
723,213 + AO353_03395 0.43 -2.3
723,213 + AO353_03395 0.43 -1.5
723,304 - AO353_03395 0.50 -0.5
723,423 + AO353_03395 0.59 -1.8
723,423 + AO353_03395 0.59 -1.0
723,423 + AO353_03395 0.59 +0.2
723,423 + AO353_03395 0.59 -0.8
723,423 + AO353_03395 0.59 -0.1
723,424 - AO353_03395 0.59 -0.0
723,424 - AO353_03395 0.59 -1.9
723,424 - AO353_03395 0.59 +0.0
723,424 - AO353_03395 0.59 -0.3
723,424 - AO353_03395 0.59 -2.1
723,424 - AO353_03395 0.59 -1.4

Or see this region's nucleotide sequence