Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03375 and AO353_03380 are separated by 105 nucleotides AO353_03380 and AO353_03385 are separated by 3 nucleotides AO353_03385 and AO353_03390 overlap by 8 nucleotides
AO353_03375: AO353_03375 - porin, at 718,163 to 719,509
_03375
AO353_03380: AO353_03380 - sugar ABC transporter ATP-binding protein, at 719,615 to 720,775
_03380
AO353_03385: AO353_03385 - sugar ABC transporter permease, at 720,779 to 721,624
_03385
AO353_03390: AO353_03390 - sugar ABC transporter permease, at 721,617 to 722,525
_03390
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 718.673 kb on - strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.720 kb on - strand, within AO353_03375 at 718.720 kb on - strand, within AO353_03375 at 718.845 kb on + strand, within AO353_03375 at 718.845 kb on + strand, within AO353_03375 at 718.845 kb on + strand, within AO353_03375 at 718.846 kb on - strand, within AO353_03375 at 718.846 kb on - strand, within AO353_03375 at 718.846 kb on - strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.884 kb on + strand, within AO353_03375 at 718.884 kb on + strand, within AO353_03375 at 718.884 kb on + strand, within AO353_03375 at 718.884 kb on + strand, within AO353_03375 at 718.884 kb on + strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.885 kb on - strand, within AO353_03375 at 718.923 kb on + strand, within AO353_03375 at 718.923 kb on + strand, within AO353_03375 at 718.924 kb on - strand, within AO353_03375 at 718.924 kb on - strand, within AO353_03375 at 718.924 kb on - strand, within AO353_03375 at 719.023 kb on - strand, within AO353_03375 at 719.092 kb on + strand, within AO353_03375 at 719.092 kb on + strand, within AO353_03375 at 719.106 kb on + strand, within AO353_03375 at 719.107 kb on - strand, within AO353_03375 at 719.107 kb on - strand, within AO353_03375 at 719.107 kb on - strand, within AO353_03375 at 719.107 kb on - strand, within AO353_03375 at 719.271 kb on + strand, within AO353_03375 at 719.295 kb on + strand, within AO353_03375 at 719.295 kb on + strand, within AO353_03375 at 719.295 kb on + strand, within AO353_03375 at 719.295 kb on + strand, within AO353_03375 at 719.296 kb on - strand, within AO353_03375 at 719.331 kb on + strand, within AO353_03375 at 719.331 kb on + strand, within AO353_03375 at 719.435 kb on + strand at 719.435 kb on + strand at 719.435 kb on + strand at 719.436 kb on - strand at 719.436 kb on - strand at 719.436 kb on - strand at 719.436 kb on - strand at 719.436 kb on - strand at 719.482 kb on + strand at 719.482 kb on + strand at 719.482 kb on + strand at 719.482 kb on + strand at 719.482 kb on + strand at 719.482 kb on + strand at 719.483 kb on - strand at 719.483 kb on - strand at 719.483 kb on - strand at 719.483 kb on - strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.513 kb on + strand at 719.514 kb on - strand at 719.514 kb on - strand at 719.514 kb on - strand at 719.527 kb on + strand at 719.527 kb on + strand at 719.528 kb on - strand at 719.528 kb on - strand at 719.528 kb on - strand at 719.528 kb on - strand at 719.528 kb on - strand at 719.528 kb on - strand at 719.533 kb on + strand at 719.533 kb on + strand at 719.534 kb on - strand at 719.536 kb on + strand at 719.536 kb on + strand at 719.536 kb on + strand at 719.537 kb on - strand at 719.537 kb on - strand at 719.547 kb on - strand at 719.551 kb on - strand at 719.551 kb on - strand at 719.561 kb on - strand at 720.105 kb on + strand, within AO353_03380 at 720.105 kb on + strand, within AO353_03380 at 720.105 kb on + strand, within AO353_03380 at 720.105 kb on + strand, within AO353_03380 at 720.105 kb on + strand, within AO353_03380 at 720.106 kb on - strand, within AO353_03380 at 720.106 kb on - strand, within AO353_03380 at 720.106 kb on - strand, within AO353_03380 at 720.204 kb on + strand, within AO353_03380 at 720.204 kb on + strand, within AO353_03380 at 720.205 kb on - strand, within AO353_03380 at 720.205 kb on - strand, within AO353_03380 at 720.306 kb on + strand, within AO353_03380 at 720.306 kb on + strand, within AO353_03380 at 720.306 kb on + strand, within AO353_03380 at 720.306 kb on + strand, within AO353_03380 at 720.306 kb on + strand, within AO353_03380 at 720.306 kb on + strand, within AO353_03380 at 720.307 kb on - strand, within AO353_03380 at 720.307 kb on - strand, within AO353_03380 at 720.520 kb on - strand, within AO353_03380 at 720.520 kb on - strand, within AO353_03380 at 720.758 kb on + strand at 720.759 kb on - strand at 720.759 kb on - strand at 720.759 kb on - strand at 720.759 kb on - strand at 720.780 kb on + strand at 720.781 kb on - strand at 720.819 kb on + strand at 720.819 kb on + strand at 720.819 kb on + strand at 720.819 kb on + strand at 720.819 kb on + strand at 720.819 kb on + strand at 720.819 kb on + strand at 720.820 kb on - strand at 720.820 kb on - strand at 720.820 kb on - strand at 720.820 kb on - strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.833 kb on + strand at 720.834 kb on - strand at 720.834 kb on - strand at 720.834 kb on - strand at 720.834 kb on - strand at 720.834 kb on - strand at 720.834 kb on - strand at 720.837 kb on + strand at 720.837 kb on + strand at 720.837 kb on + strand at 720.837 kb on + strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.838 kb on - strand at 720.891 kb on + strand, within AO353_03385 at 720.891 kb on + strand, within AO353_03385 at 720.891 kb on + strand, within AO353_03385 at 720.891 kb on + strand, within AO353_03385 at 720.891 kb on + strand, within AO353_03385 at 720.891 kb on + strand, within AO353_03385 at 720.891 kb on + strand, within AO353_03385 at 720.892 kb on - strand, within AO353_03385 at 720.892 kb on - strand, within AO353_03385 at 720.892 kb on - strand, within AO353_03385 at 721.131 kb on + strand, within AO353_03385 at 721.131 kb on + strand, within AO353_03385 at 721.131 kb on + strand, within AO353_03385 at 721.132 kb on - strand, within AO353_03385 at 721.132 kb on - strand, within AO353_03385 at 721.132 kb on - strand, within AO353_03385 at 721.132 kb on - strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.134 kb on + strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.135 kb on - strand, within AO353_03385 at 721.170 kb on + strand, within AO353_03385 at 721.335 kb on + strand, within AO353_03385 at 721.335 kb on + strand, within AO353_03385 at 721.336 kb on - strand, within AO353_03385 at 721.336 kb on - strand, within AO353_03385 at 721.336 kb on - strand, within AO353_03385 at 721.407 kb on + strand, within AO353_03385 at 721.407 kb on + strand, within AO353_03385 at 721.415 kb on + strand, within AO353_03385 at 721.542 kb on + strand at 721.542 kb on + strand at 721.542 kb on + strand at 721.543 kb on - strand at 721.572 kb on + strand at 721.572 kb on + strand at 721.572 kb on + strand at 721.573 kb on - strand at 721.573 kb on - strand at 721.573 kb on - strand at 721.573 kb on - strand at 721.618 kb on + strand at 721.618 kb on + strand at 721.619 kb on - strand at 721.619 kb on - strand at 721.648 kb on + strand at 721.649 kb on - strand at 721.649 kb on - strand at 721.655 kb on - strand at 721.655 kb on - strand at 721.655 kb on - strand at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.744 kb on + strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.745 kb on - strand, within AO353_03390 at 721.774 kb on + strand, within AO353_03390 at 721.775 kb on - strand, within AO353_03390 at 721.775 kb on - strand, within AO353_03390
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 718,673 - AO353_03375 0.38 +0.0 718,704 + AO353_03375 0.40 -1.0 718,704 + AO353_03375 0.40 -0.5 718,704 + AO353_03375 0.40 -0.1 718,704 + AO353_03375 0.40 -0.1 718,704 + AO353_03375 0.40 +0.2 718,704 + AO353_03375 0.40 -0.4 718,704 + AO353_03375 0.40 +1.6 718,704 + AO353_03375 0.40 +0.0 718,704 + AO353_03375 0.40 -0.5 718,705 - AO353_03375 0.40 -2.0 718,705 - AO353_03375 0.40 +0.0 718,705 - AO353_03375 0.40 +0.4 718,705 - AO353_03375 0.40 -0.7 718,705 - AO353_03375 0.40 -0.1 718,705 - AO353_03375 0.40 -0.1 718,705 - AO353_03375 0.40 -0.8 718,705 - AO353_03375 0.40 -0.8 718,720 - AO353_03375 0.41 +1.4 718,720 - AO353_03375 0.41 -0.5 718,845 + AO353_03375 0.51 +0.5 718,845 + AO353_03375 0.51 +1.6 718,845 + AO353_03375 0.51 -0.5 718,846 - AO353_03375 0.51 -1.0 718,846 - AO353_03375 0.51 +0.5 718,846 - AO353_03375 0.51 -0.5 718,863 + AO353_03375 0.52 +1.0 718,863 + AO353_03375 0.52 +0.6 718,863 + AO353_03375 0.52 -0.8 718,863 + AO353_03375 0.52 -0.1 718,863 + AO353_03375 0.52 +0.5 718,863 + AO353_03375 0.52 -0.0 718,863 + AO353_03375 0.52 +1.2 718,864 - AO353_03375 0.52 -0.0 718,864 - AO353_03375 0.52 +0.5 718,864 - AO353_03375 0.52 -0.4 718,864 - AO353_03375 0.52 -0.1 718,884 + AO353_03375 0.54 +1.8 718,884 + AO353_03375 0.54 -0.0 718,884 + AO353_03375 0.54 +0.3 718,884 + AO353_03375 0.54 +0.7 718,884 + AO353_03375 0.54 +0.3 718,885 - AO353_03375 0.54 -0.8 718,885 - AO353_03375 0.54 +0.3 718,885 - -1.0 718,885 - AO353_03375 0.54 +0.0 718,885 - AO353_03375 0.54 -0.5 718,885 - AO353_03375 0.54 +1.5 718,885 - AO353_03375 0.54 -0.8 718,885 - AO353_03375 0.54 +0.3 718,885 - AO353_03375 0.54 -1.8 718,885 - AO353_03375 0.54 -0.8 718,885 - AO353_03375 0.54 -0.7 718,885 - AO353_03375 0.54 +0.5 718,923 + AO353_03375 0.56 -0.8 718,923 + AO353_03375 0.56 -0.7 718,924 - AO353_03375 0.56 -1.3 718,924 - AO353_03375 0.56 +0.5 718,924 - AO353_03375 0.56 -0.3 719,023 - AO353_03375 0.64 -1.5 719,092 + AO353_03375 0.69 +0.0 719,092 + AO353_03375 0.69 -1.8 719,106 + AO353_03375 0.70 +1.3 719,107 - AO353_03375 0.70 -0.1 719,107 - AO353_03375 0.70 -0.1 719,107 - AO353_03375 0.70 +0.3 719,107 - AO353_03375 0.70 +1.0 719,271 + AO353_03375 0.82 -0.1 719,295 + AO353_03375 0.84 -0.5 719,295 + AO353_03375 0.84 +0.2 719,295 + AO353_03375 0.84 -1.0 719,295 + AO353_03375 0.84 -0.3 719,296 - AO353_03375 0.84 +0.2 719,331 + AO353_03375 0.87 -1.0 719,331 + AO353_03375 0.87 -0.1 719,435 + -0.2 719,435 + +1.3 719,435 + -0.9 719,436 - -1.2 719,436 - -0.2 719,436 - +3.0 719,436 - -0.0 719,436 - -0.8 719,482 + -0.5 719,482 + +0.3 719,482 + -2.4 719,482 + +0.8 719,482 + +0.0 719,482 + -0.4 719,483 - -0.0 719,483 - +0.3 719,483 - -0.1 719,483 - +0.9 719,513 + -0.5 719,513 + +0.2 719,513 + -0.3 719,513 + -1.4 719,513 + -1.4 719,513 + -2.0 719,513 + -0.4 719,513 + +0.3 719,513 + -0.3 719,514 - +0.2 719,514 - -1.5 719,514 - +0.5 719,527 + +0.8 719,527 + -0.7 719,528 - +0.0 719,528 - +0.0 719,528 - -0.0 719,528 - +0.5 719,528 - +1.0 719,528 - -0.1 719,533 + +0.5 719,533 + +0.5 719,534 - +0.2 719,536 + -2.3 719,536 + -0.1 719,536 + -0.3 719,537 - +0.2 719,537 - -0.3 719,547 - +0.7 719,551 - +0.0 719,551 - -0.2 719,561 - -1.6 720,105 + AO353_03380 0.42 -1.9 720,105 + AO353_03380 0.42 -1.8 720,105 + AO353_03380 0.42 -0.8 720,105 + AO353_03380 0.42 -0.5 720,105 + AO353_03380 0.42 -1.2 720,106 - AO353_03380 0.42 -0.4 720,106 - AO353_03380 0.42 -1.5 720,106 - AO353_03380 0.42 -1.4 720,204 + AO353_03380 0.51 -0.8 720,204 + AO353_03380 0.51 -1.0 720,205 - AO353_03380 0.51 -1.3 720,205 - AO353_03380 0.51 -1.9 720,306 + AO353_03380 0.60 -0.9 720,306 + AO353_03380 0.60 -2.1 720,306 + AO353_03380 0.60 -0.5 720,306 + AO353_03380 0.60 -1.2 720,306 + AO353_03380 0.60 -2.7 720,306 + AO353_03380 0.60 -0.7 720,307 - AO353_03380 0.60 -1.9 720,307 - AO353_03380 0.60 +1.6 720,520 - AO353_03380 0.78 -0.3 720,520 - AO353_03380 0.78 -2.5 720,758 + -2.7 720,759 - +0.2 720,759 - -1.0 720,759 - -0.1 720,759 - -1.3 720,780 + +1.2 720,781 - +0.3 720,819 + -2.9 720,819 + -0.1 720,819 + +1.0 720,819 + -1.1 720,819 + -2.9 720,819 + -1.8 720,819 + -0.5 720,820 - -0.8 720,820 - -1.3 720,820 - +0.6 720,820 - -0.3 720,833 + +0.3 720,833 + -1.0 720,833 + -0.9 720,833 + -0.6 720,833 + +0.3 720,833 + -1.0 720,833 + -0.1 720,833 + -2.5 720,833 + -0.5 720,834 - -2.7 720,834 - -1.3 720,834 - -2.5 720,834 - -2.0 720,834 - -1.0 720,834 - -1.3 720,837 + -2.2 720,837 + -1.0 720,837 + -2.1 720,837 + -1.2 720,838 - -1.2 720,838 - -2.9 720,838 - -3.0 720,838 - +0.4 720,838 - -1.6 720,838 - -0.1 720,838 - -1.5 720,838 - -1.6 720,891 + AO353_03385 0.13 -1.0 720,891 + AO353_03385 0.13 -2.7 720,891 + AO353_03385 0.13 -2.5 720,891 + AO353_03385 0.13 +0.3 720,891 + AO353_03385 0.13 +0.5 720,891 + AO353_03385 0.13 -0.8 720,891 + AO353_03385 0.13 -1.3 720,892 - AO353_03385 0.13 -1.4 720,892 - AO353_03385 0.13 -1.0 720,892 - AO353_03385 0.13 -1.4 721,131 + AO353_03385 0.42 -2.3 721,131 + AO353_03385 0.42 -1.0 721,131 + AO353_03385 0.42 -2.6 721,132 - AO353_03385 0.42 -1.1 721,132 - AO353_03385 0.42 +0.5 721,132 - AO353_03385 0.42 +0.7 721,132 - AO353_03385 0.42 -2.1 721,134 + AO353_03385 0.42 -0.6 721,134 + AO353_03385 0.42 -2.5 721,134 + AO353_03385 0.42 -1.7 721,134 + AO353_03385 0.42 -1.0 721,134 + AO353_03385 0.42 -3.2 721,134 + AO353_03385 0.42 +0.0 721,134 + AO353_03385 0.42 -2.0 721,134 + AO353_03385 0.42 -2.0 721,134 + AO353_03385 0.42 -0.1 721,134 + AO353_03385 0.42 -1.5 721,135 - AO353_03385 0.42 +0.3 721,135 - AO353_03385 0.42 -1.2 721,135 - AO353_03385 0.42 -0.5 721,135 - AO353_03385 0.42 -2.4 721,135 - AO353_03385 0.42 -0.5 721,135 - AO353_03385 0.42 -0.3 721,135 - AO353_03385 0.42 -1.5 721,135 - AO353_03385 0.42 -0.4 721,135 - AO353_03385 0.42 +2.0 721,135 - AO353_03385 0.42 -0.5 721,135 - AO353_03385 0.42 -1.7 721,135 - AO353_03385 0.42 -1.8 721,135 - AO353_03385 0.42 -0.5 721,170 + AO353_03385 0.46 +0.0 721,335 + AO353_03385 0.66 -1.3 721,335 + AO353_03385 0.66 -1.0 721,336 - AO353_03385 0.66 -1.1 721,336 - AO353_03385 0.66 -0.5 721,336 - AO353_03385 0.66 +0.5 721,407 + AO353_03385 0.74 -2.0 721,407 + AO353_03385 0.74 +0.0 721,415 + AO353_03385 0.75 -0.3 721,542 + -0.1 721,542 + -1.7 721,542 + -1.3 721,543 - -1.3 721,572 + -0.9 721,572 + +1.5 721,572 + -0.6 721,573 - -1.9 721,573 - -1.8 721,573 - -1.2 721,573 - +0.1 721,618 + -0.6 721,618 + -0.6 721,619 - -3.0 721,619 - -0.7 721,648 + -1.0 721,649 - -0.8 721,649 - -0.8 721,655 - -1.0 721,655 - -0.3 721,655 - -1.4 721,744 + AO353_03390 0.14 -0.3 721,744 + AO353_03390 0.14 -1.4 721,744 + AO353_03390 0.14 -1.1 721,744 + AO353_03390 0.14 -2.0 721,744 + AO353_03390 0.14 -1.7 721,744 + AO353_03390 0.14 -0.9 721,744 + AO353_03390 0.14 -1.9 721,744 + AO353_03390 0.14 -0.9 721,744 + AO353_03390 0.14 -1.5 721,745 - AO353_03390 0.14 -1.9 721,745 - AO353_03390 0.14 -1.2 721,745 - AO353_03390 0.14 +0.0 721,745 - AO353_03390 0.14 -2.7 721,745 - AO353_03390 0.14 +0.3 721,745 - AO353_03390 0.14 -1.4 721,745 - AO353_03390 0.14 +0.0 721,745 - AO353_03390 0.14 -2.2 721,774 + AO353_03390 0.17 -1.8 721,775 - AO353_03390 0.17 -1.1 721,775 - AO353_03390 0.17 -2.0
Or see this region's nucleotide sequence