Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03240 and AO353_03245 are separated by 223 nucleotides AO353_03245 and AO353_03250 are separated by 82 nucleotides AO353_03250 and AO353_03255 are separated by 215 nucleotides
AO353_03240: AO353_03240 - hypothetical protein, at 688,921 to 690,624
_03240
AO353_03245: AO353_03245 - permease DsdX, at 690,848 to 692,200
_03245
AO353_03250: AO353_03250 - gluconokinase, at 692,283 to 692,816
_03250
AO353_03255: AO353_03255 - LacI family transcriptional regulator, at 693,032 to 694,063
_03255
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 689.885 kb on + strand, within AO353_03240 at 689.885 kb on + strand, within AO353_03240 at 689.886 kb on - strand, within AO353_03240 at 689.886 kb on - strand, within AO353_03240 at 689.886 kb on - strand, within AO353_03240 at 689.886 kb on - strand, within AO353_03240 at 689.886 kb on - strand, within AO353_03240 at 689.958 kb on + strand, within AO353_03240 at 689.959 kb on - strand, within AO353_03240 at 689.959 kb on - strand, within AO353_03240 at 690.000 kb on - strand, within AO353_03240 at 690.000 kb on - strand, within AO353_03240 at 690.000 kb on - strand, within AO353_03240 at 690.000 kb on - strand, within AO353_03240 at 690.000 kb on - strand, within AO353_03240 at 690.012 kb on - strand, within AO353_03240 at 690.012 kb on - strand, within AO353_03240 at 690.012 kb on - strand, within AO353_03240 at 690.019 kb on - strand, within AO353_03240 at 690.019 kb on - strand, within AO353_03240 at 690.019 kb on - strand, within AO353_03240 at 690.049 kb on - strand, within AO353_03240 at 690.050 kb on + strand, within AO353_03240 at 690.050 kb on + strand, within AO353_03240 at 690.050 kb on + strand, within AO353_03240 at 690.050 kb on + strand, within AO353_03240 at 690.051 kb on - strand, within AO353_03240 at 690.051 kb on - strand, within AO353_03240 at 690.051 kb on - strand, within AO353_03240 at 690.051 kb on - strand, within AO353_03240 at 690.051 kb on - strand, within AO353_03240 at 690.078 kb on + strand, within AO353_03240 at 690.103 kb on - strand, within AO353_03240 at 690.149 kb on - strand, within AO353_03240 at 690.184 kb on - strand, within AO353_03240 at 690.268 kb on + strand, within AO353_03240 at 690.268 kb on + strand, within AO353_03240 at 690.269 kb on - strand, within AO353_03240 at 690.336 kb on + strand, within AO353_03240 at 690.336 kb on + strand, within AO353_03240 at 690.337 kb on - strand, within AO353_03240 at 690.344 kb on + strand, within AO353_03240 at 690.345 kb on - strand, within AO353_03240 at 690.345 kb on - strand, within AO353_03240 at 690.374 kb on + strand, within AO353_03240 at 690.374 kb on + strand, within AO353_03240 at 690.375 kb on - strand, within AO353_03240 at 690.378 kb on - strand, within AO353_03240 at 690.378 kb on - strand, within AO353_03240 at 690.378 kb on - strand, within AO353_03240 at 690.392 kb on + strand, within AO353_03240 at 690.392 kb on + strand, within AO353_03240 at 690.392 kb on + strand, within AO353_03240 at 690.392 kb on + strand, within AO353_03240 at 690.393 kb on - strand, within AO353_03240 at 690.393 kb on - strand, within AO353_03240 at 690.393 kb on - strand, within AO353_03240 at 690.393 kb on - strand, within AO353_03240 at 690.408 kb on - strand, within AO353_03240 at 690.408 kb on - strand, within AO353_03240 at 690.444 kb on + strand, within AO353_03240 at 690.446 kb on + strand, within AO353_03240 at 690.446 kb on + strand, within AO353_03240 at 690.446 kb on + strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.447 kb on - strand, within AO353_03240 at 690.483 kb on + strand at 690.483 kb on + strand at 690.484 kb on - strand at 690.494 kb on + strand at 690.494 kb on + strand at 690.495 kb on - strand at 690.495 kb on - strand at 690.499 kb on + strand at 690.499 kb on + strand at 690.500 kb on - strand at 690.500 kb on - strand at 690.500 kb on - strand at 690.555 kb on + strand at 690.561 kb on - strand at 690.561 kb on - strand at 690.561 kb on - strand at 690.647 kb on + strand at 690.647 kb on + strand at 690.647 kb on + strand at 690.647 kb on + strand at 690.647 kb on + strand at 690.648 kb on - strand at 690.648 kb on - strand at 690.648 kb on - strand at 690.677 kb on + strand at 690.677 kb on + strand at 690.678 kb on - strand at 690.732 kb on + strand at 690.733 kb on - strand at 690.782 kb on - strand at 690.782 kb on - strand at 690.808 kb on + strand at 690.808 kb on + strand at 690.808 kb on + strand at 690.809 kb on - strand at 690.809 kb on - strand at 690.809 kb on - strand at 690.809 kb on - strand at 690.844 kb on + strand at 690.844 kb on + strand at 690.844 kb on + strand at 690.845 kb on - strand at 690.845 kb on - strand at 690.874 kb on + strand at 690.874 kb on + strand at 690.954 kb on + strand at 690.954 kb on + strand at 690.954 kb on + strand at 690.954 kb on + strand at 690.955 kb on - strand at 690.955 kb on - strand at 690.955 kb on - strand at 691.344 kb on + strand, within AO353_03245 at 691.344 kb on + strand, within AO353_03245 at 691.344 kb on + strand, within AO353_03245 at 691.344 kb on + strand, within AO353_03245 at 691.344 kb on + strand, within AO353_03245 at 691.345 kb on - strand, within AO353_03245 at 691.345 kb on - strand, within AO353_03245 at 691.345 kb on - strand, within AO353_03245 at 691.345 kb on - strand, within AO353_03245 at 691.561 kb on + strand, within AO353_03245 at 691.562 kb on - strand at 691.562 kb on - strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.578 kb on + strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.579 kb on - strand, within AO353_03245 at 691.599 kb on + strand, within AO353_03245 at 691.599 kb on + strand, within AO353_03245 at 691.647 kb on + strand, within AO353_03245 at 691.820 kb on + strand, within AO353_03245 at 691.820 kb on + strand, within AO353_03245 at 691.820 kb on + strand, within AO353_03245 at 691.820 kb on + strand, within AO353_03245 at 691.820 kb on + strand, within AO353_03245 at 691.821 kb on - strand, within AO353_03245 at 691.821 kb on - strand, within AO353_03245 at 691.821 kb on - strand, within AO353_03245 at 691.821 kb on - strand, within AO353_03245 at 692.093 kb on + strand at 692.093 kb on + strand at 692.093 kb on + strand at 692.094 kb on - strand at 692.139 kb on - strand at 692.207 kb on + strand at 692.207 kb on + strand at 692.208 kb on - strand at 692.228 kb on - strand at 692.228 kb on - strand at 692.265 kb on + strand at 692.545 kb on + strand, within AO353_03250 at 692.546 kb on - strand, within AO353_03250 at 692.706 kb on - strand, within AO353_03250 at 692.818 kb on + strand at 692.818 kb on + strand at 692.818 kb on + strand at 692.818 kb on + strand at 692.818 kb on + strand at 692.819 kb on - strand at 692.819 kb on - strand at 692.819 kb on - strand at 692.819 kb on - strand at 692.819 kb on - strand at 692.853 kb on - strand at 692.864 kb on + strand at 692.864 kb on + strand at 692.864 kb on + strand at 692.865 kb on - strand at 693.044 kb on - strand at 693.053 kb on - strand at 693.058 kb on + strand at 693.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 689,885 + AO353_03240 0.57 +0.7 689,885 + AO353_03240 0.57 -2.8 689,886 - AO353_03240 0.57 +0.3 689,886 - AO353_03240 0.57 -0.4 689,886 - AO353_03240 0.57 -0.1 689,886 - AO353_03240 0.57 +0.3 689,886 - AO353_03240 0.57 -0.8 689,958 + AO353_03240 0.61 -0.5 689,959 - AO353_03240 0.61 -0.8 689,959 - AO353_03240 0.61 -2.2 690,000 - AO353_03240 0.63 +0.5 690,000 - AO353_03240 0.63 -0.6 690,000 - AO353_03240 0.63 +0.7 690,000 - AO353_03240 0.63 -0.1 690,000 - AO353_03240 0.63 +2.2 690,012 - AO353_03240 0.64 -2.3 690,012 - AO353_03240 0.64 +0.5 690,012 - AO353_03240 0.64 +0.0 690,019 - AO353_03240 0.64 +0.7 690,019 - AO353_03240 0.64 +0.0 690,019 - AO353_03240 0.64 +0.7 690,049 - AO353_03240 0.66 -0.0 690,050 + AO353_03240 0.66 +0.5 690,050 + AO353_03240 0.66 +0.0 690,050 + AO353_03240 0.66 +0.0 690,050 + AO353_03240 0.66 -0.5 690,051 - AO353_03240 0.66 +0.0 690,051 - AO353_03240 0.66 -0.4 690,051 - AO353_03240 0.66 +0.1 690,051 - AO353_03240 0.66 -0.8 690,051 - AO353_03240 0.66 -1.8 690,078 + AO353_03240 0.68 -0.1 690,103 - AO353_03240 0.69 -0.4 690,149 - AO353_03240 0.72 +0.3 690,184 - AO353_03240 0.74 +0.3 690,268 + AO353_03240 0.79 +0.0 690,268 + AO353_03240 0.79 +0.1 690,269 - AO353_03240 0.79 -1.3 690,336 + AO353_03240 0.83 -2.0 690,336 + AO353_03240 0.83 -0.8 690,337 - AO353_03240 0.83 -1.1 690,344 + AO353_03240 0.84 +0.2 690,345 - AO353_03240 0.84 +0.5 690,345 - AO353_03240 0.84 +0.0 690,374 + AO353_03240 0.85 +0.0 690,374 + AO353_03240 0.85 -2.9 690,375 - AO353_03240 0.85 +0.3 690,378 - AO353_03240 0.86 -0.4 690,378 - AO353_03240 0.86 +0.0 690,378 - AO353_03240 0.86 +1.0 690,392 + AO353_03240 0.86 -1.7 690,392 + AO353_03240 0.86 +0.2 690,392 + AO353_03240 0.86 +2.2 690,392 + AO353_03240 0.86 +0.4 690,393 - AO353_03240 0.86 +0.5 690,393 - AO353_03240 0.86 -0.7 690,393 - AO353_03240 0.86 +1.0 690,393 - AO353_03240 0.86 +0.6 690,408 - AO353_03240 0.87 +0.2 690,408 - AO353_03240 0.87 +0.2 690,444 + AO353_03240 0.89 +0.7 690,446 + AO353_03240 0.89 -0.4 690,446 + AO353_03240 0.89 -0.3 690,446 + AO353_03240 0.89 -0.1 690,447 - AO353_03240 0.90 +1.9 690,447 - AO353_03240 0.90 -1.0 690,447 - AO353_03240 0.90 -0.1 690,447 - AO353_03240 0.90 +1.5 690,447 - AO353_03240 0.90 -0.2 690,447 - AO353_03240 0.90 +1.8 690,447 - AO353_03240 0.90 -0.3 690,483 + -1.1 690,483 + -0.8 690,484 - +1.5 690,494 + +0.9 690,494 + +0.3 690,495 - +2.0 690,495 - -0.9 690,499 + -0.6 690,499 + -0.5 690,500 - -0.5 690,500 - +0.7 690,500 - -1.4 690,555 + +0.1 690,561 - -1.6 690,561 - -1.1 690,561 - -0.7 690,647 + -0.1 690,647 + -0.7 690,647 + -1.4 690,647 + -1.1 690,647 + -0.3 690,648 - +0.9 690,648 - +1.2 690,648 - +0.6 690,677 + -1.3 690,677 + -2.0 690,678 - -1.7 690,732 + -1.9 690,733 - -0.3 690,782 - +0.2 690,782 - +0.5 690,808 + -1.8 690,808 + +0.1 690,808 + -0.8 690,809 - -1.3 690,809 - +0.5 690,809 - -0.5 690,809 - -0.9 690,844 + -1.5 690,844 + -1.0 690,844 + -3.2 690,845 - +0.8 690,845 - +0.5 690,874 + -0.2 690,874 + +0.3 690,954 + -1.3 690,954 + -3.5 690,954 + -2.8 690,954 + -2.2 690,955 - -1.5 690,955 - -1.8 690,955 - -2.5 691,344 + AO353_03245 0.37 -3.1 691,344 + AO353_03245 0.37 -1.5 691,344 + AO353_03245 0.37 -2.7 691,344 + AO353_03245 0.37 -1.6 691,344 + AO353_03245 0.37 -2.0 691,345 - AO353_03245 0.37 -2.0 691,345 - AO353_03245 0.37 -1.5 691,345 - AO353_03245 0.37 -1.6 691,345 - AO353_03245 0.37 -2.5 691,561 + AO353_03245 0.53 -2.0 691,562 - +0.0 691,562 - AO353_03245 0.53 -0.4 691,578 + AO353_03245 0.54 -1.5 691,578 + AO353_03245 0.54 -2.0 691,578 + AO353_03245 0.54 -1.3 691,578 + AO353_03245 0.54 -2.8 691,578 + AO353_03245 0.54 -1.9 691,578 + AO353_03245 0.54 -1.1 691,578 + AO353_03245 0.54 +0.4 691,578 + AO353_03245 0.54 -2.5 691,578 + AO353_03245 0.54 -1.0 691,579 - AO353_03245 0.54 -1.1 691,579 - AO353_03245 0.54 -1.0 691,579 - AO353_03245 0.54 -1.5 691,579 - AO353_03245 0.54 -1.9 691,579 - AO353_03245 0.54 -3.0 691,579 - AO353_03245 0.54 -1.5 691,579 - AO353_03245 0.54 -0.5 691,579 - AO353_03245 0.54 -2.0 691,599 + AO353_03245 0.56 -2.0 691,599 + AO353_03245 0.56 -1.7 691,647 + AO353_03245 0.59 -1.8 691,820 + AO353_03245 0.72 -0.4 691,820 + AO353_03245 0.72 -1.1 691,820 + AO353_03245 0.72 -3.9 691,820 + AO353_03245 0.72 -1.9 691,820 + AO353_03245 0.72 -1.7 691,821 - AO353_03245 0.72 -0.2 691,821 - AO353_03245 0.72 -1.1 691,821 - AO353_03245 0.72 -1.9 691,821 - AO353_03245 0.72 -1.8 692,093 + -2.5 692,093 + -1.1 692,093 + -0.6 692,094 - -2.6 692,139 - -2.3 692,207 + -0.1 692,207 + -1.0 692,208 - -0.4 692,228 - +0.1 692,228 - -2.3 692,265 + -1.3 692,545 + AO353_03250 0.49 -1.6 692,546 - AO353_03250 0.49 -1.0 692,706 - AO353_03250 0.79 -2.2 692,818 + -1.4 692,818 + -0.6 692,818 + -1.3 692,818 + -1.3 692,818 + -0.4 692,819 - -0.3 692,819 - -1.0 692,819 - -3.8 692,819 - -0.9 692,819 - -3.5 692,853 - -1.4 692,864 + -2.3 692,864 + -0.5 692,864 + -2.1 692,865 - +0.9 693,044 - -1.1 693,053 - +0.5 693,058 + +0.0 693,059 - +1.8
Or see this region's nucleotide sequence