Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01325

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01320 and AO353_01325 are separated by 238 nucleotidesAO353_01325 and AO353_01330 are separated by 12 nucleotidesAO353_01330 and AO353_01335 are separated by 42 nucleotides AO353_01320: AO353_01320 - class V aminotransferase, at 286,023 to 287,156 _01320 AO353_01325: AO353_01325 - hydrolase TatD, at 287,395 to 288,183 _01325 AO353_01330: AO353_01330 - pilus assembly protein PilZ, at 288,196 to 288,552 _01330 AO353_01335: AO353_01335 - DNA polymerase III subunit delta', at 288,595 to 289,581 _01335 Position (kb) 287 288 289Strain fitness (log2 ratio) -2 -1 0 1 2 3at 286.605 kb on + strand, within AO353_01320at 286.605 kb on + strand, within AO353_01320at 286.605 kb on + strand, within AO353_01320at 286.606 kb on - strand, within AO353_01320at 286.606 kb on - strand, within AO353_01320at 286.606 kb on - strand, within AO353_01320at 286.606 kb on - strand, within AO353_01320at 286.606 kb on - strand, within AO353_01320at 286.606 kb on - strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.674 kb on + strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.675 kb on - strand, within AO353_01320at 286.678 kb on + strand, within AO353_01320at 286.678 kb on + strand, within AO353_01320at 286.678 kb on + strand, within AO353_01320at 286.678 kb on + strand, within AO353_01320at 286.678 kb on + strand, within AO353_01320at 286.679 kb on - strand, within AO353_01320at 286.679 kb on - strand, within AO353_01320at 286.679 kb on - strand, within AO353_01320at 286.749 kb on + strand, within AO353_01320at 286.749 kb on + strand, within AO353_01320at 286.750 kb on - strand, within AO353_01320at 286.750 kb on - strand, within AO353_01320at 286.942 kb on + strand, within AO353_01320at 287.023 kb on - strand, within AO353_01320at 287.023 kb on - strand, within AO353_01320at 287.095 kb on - strandat 287.095 kb on - strandat 287.110 kb on + strandat 287.111 kb on - strandat 287.111 kb on - strandat 287.111 kb on - strandat 287.177 kb on + strandat 287.178 kb on - strandat 287.178 kb on - strandat 287.178 kb on - strandat 287.178 kb on - strandat 287.227 kb on + strandat 287.228 kb on - strandat 287.228 kb on - strandat 287.237 kb on + strandat 287.237 kb on + strandat 287.237 kb on + strandat 287.238 kb on - strandat 287.238 kb on - strandat 287.238 kb on - strandat 287.238 kb on - strandat 287.287 kb on + strandat 287.287 kb on + strandat 287.288 kb on - strandat 287.302 kb on + strandat 287.303 kb on - strandat 287.313 kb on + strandat 287.313 kb on + strandat 287.313 kb on + strandat 287.314 kb on - strandat 287.319 kb on + strandat 287.319 kb on + strandat 287.319 kb on + strandat 287.320 kb on - strandat 287.320 kb on - strandat 287.445 kb on + strandat 287.446 kb on - strandat 287.469 kb on - strandat 287.469 kb on - strandat 287.516 kb on + strand, within AO353_01325at 287.517 kb on - strand, within AO353_01325at 287.562 kb on - strand, within AO353_01325at 287.562 kb on - strand, within AO353_01325at 287.664 kb on + strand, within AO353_01325at 287.664 kb on + strand, within AO353_01325at 287.665 kb on - strand, within AO353_01325at 287.666 kb on + strand, within AO353_01325at 287.667 kb on - strand, within AO353_01325at 287.667 kb on - strand, within AO353_01325at 287.769 kb on + strand, within AO353_01325at 287.879 kb on + strand, within AO353_01325at 287.879 kb on + strand, within AO353_01325at 287.885 kb on + strand, within AO353_01325at 287.886 kb on - strand, within AO353_01325at 288.018 kb on - strand, within AO353_01325at 288.175 kb on + strandat 288.175 kb on + strandat 288.175 kb on + strandat 288.176 kb on - strandat 288.176 kb on - strandat 288.183 kb on + strandat 288.183 kb on + strandat 288.183 kb on + strandat 288.183 kb on + strandat 288.184 kb on - strandat 288.184 kb on - strandat 288.184 kb on - strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.197 kb on + strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.198 kb on - strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.204 kb on + strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.205 kb on - strandat 288.242 kb on + strand, within AO353_01330at 288.242 kb on + strand, within AO353_01330at 288.334 kb on - strand, within AO353_01330at 288.400 kb on + strand, within AO353_01330at 288.400 kb on + strand, within AO353_01330at 288.401 kb on - strand, within AO353_01330at 288.419 kb on + strand, within AO353_01330at 288.419 kb on + strand, within AO353_01330at 288.419 kb on + strand, within AO353_01330at 288.419 kb on + strand, within AO353_01330at 288.419 kb on + strand, within AO353_01330at 288.420 kb on - strand, within AO353_01330at 288.420 kb on - strand, within AO353_01330at 288.470 kb on + strand, within AO353_01330at 288.470 kb on + strand, within AO353_01330at 288.470 kb on + strand, within AO353_01330at 288.470 kb on + strand, within AO353_01330at 288.470 kb on + strand, within AO353_01330at 288.471 kb on - strand, within AO353_01330at 288.471 kb on - strand, within AO353_01330at 288.471 kb on - strand, within AO353_01330at 288.471 kb on - strand, within AO353_01330at 288.471 kb on - strandat 288.471 kb on - strand, within AO353_01330at 288.471 kb on - strand, within AO353_01330at 288.471 kb on - strand, within AO353_01330at 288.479 kb on + strand, within AO353_01330at 288.582 kb on + strandat 288.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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286,605 + AO353_01320 0.51 -0.7
286,605 + AO353_01320 0.51 -0.1
286,605 + AO353_01320 0.51 -0.3
286,606 - AO353_01320 0.51 +1.5
286,606 - AO353_01320 0.51 +0.3
286,606 - AO353_01320 0.51 +0.5
286,606 - AO353_01320 0.51 +0.7
286,606 - AO353_01320 0.51 +0.1
286,606 - AO353_01320 0.51 +0.2
286,674 + AO353_01320 0.57 +1.2
286,674 + AO353_01320 0.57 +0.3
286,674 + AO353_01320 0.57 +1.0
286,674 + AO353_01320 0.57 -1.5
286,674 + AO353_01320 0.57 +0.2
286,674 + AO353_01320 0.57 -0.1
286,674 + AO353_01320 0.57 -0.2
286,674 + AO353_01320 0.57 -0.7
286,674 + AO353_01320 0.57 +0.7
286,674 + AO353_01320 0.57 -1.3
286,674 + AO353_01320 0.57 -0.2
286,674 + AO353_01320 0.57 -0.6
286,674 + AO353_01320 0.57 +1.6
286,674 + AO353_01320 0.57 +0.0
286,674 + AO353_01320 0.57 +1.0
286,674 + AO353_01320 0.57 -0.8
286,674 + AO353_01320 0.57 -0.8
286,674 + AO353_01320 0.57 +1.7
286,674 + AO353_01320 0.57 +1.0
286,674 + AO353_01320 0.57 +1.7
286,674 + AO353_01320 0.57 -1.6
286,674 + AO353_01320 0.57 -2.0
286,674 + AO353_01320 0.57 -0.8
286,674 + AO353_01320 0.57 -0.8
286,674 + AO353_01320 0.57 +0.5
286,674 + AO353_01320 0.57 -1.2
286,674 + AO353_01320 0.57 -0.1
286,674 + AO353_01320 0.57 +0.2
286,675 - AO353_01320 0.57 -0.9
286,675 - AO353_01320 0.57 -0.5
286,675 - AO353_01320 0.57 +0.2
286,675 - AO353_01320 0.57 -0.8
286,675 - AO353_01320 0.57 -0.4
286,675 - AO353_01320 0.57 -0.4
286,675 - AO353_01320 0.57 +0.5
286,675 - AO353_01320 0.57 -0.0
286,675 - AO353_01320 0.57 +0.4
286,675 - AO353_01320 0.57 -0.5
286,675 - AO353_01320 0.57 -0.0
286,675 - AO353_01320 0.57 +0.4
286,675 - AO353_01320 0.57 +0.6
286,675 - AO353_01320 0.57 +0.2
286,675 - AO353_01320 0.57 +0.1
286,675 - AO353_01320 0.57 +0.2
286,675 - AO353_01320 0.57 -1.6
286,675 - AO353_01320 0.57 +0.3
286,675 - AO353_01320 0.57 +1.7
286,675 - AO353_01320 0.57 -0.9
286,675 - AO353_01320 0.57 -0.1
286,675 - AO353_01320 0.57 +0.1
286,675 - AO353_01320 0.57 -0.5
286,675 - AO353_01320 0.57 +1.0
286,678 + AO353_01320 0.58 -0.6
286,678 + AO353_01320 0.58 -1.3
286,678 + AO353_01320 0.58 -0.5
286,678 + AO353_01320 0.58 +0.1
286,678 + AO353_01320 0.58 -0.4
286,679 - AO353_01320 0.58 +0.4
286,679 - AO353_01320 0.58 -0.0
286,679 - AO353_01320 0.58 +0.4
286,749 + AO353_01320 0.64 +0.4
286,749 + AO353_01320 0.64 +0.2
286,750 - AO353_01320 0.64 -2.2
286,750 - AO353_01320 0.64 +0.0
286,942 + AO353_01320 0.81 -1.9
287,023 - AO353_01320 0.88 -0.5
287,023 - AO353_01320 0.88 -2.7
287,095 - -1.2
287,095 - -1.3
287,110 + +1.0
287,111 - -0.6
287,111 - +1.0
287,111 - -1.2
287,177 + +0.6
287,178 - -0.2
287,178 - +0.7
287,178 - -1.1
287,178 - -2.6
287,227 + -0.4
287,228 - +0.2
287,228 - -0.3
287,237 + -0.3
287,237 + -0.9
287,237 + -0.8
287,238 - +0.4
287,238 - -0.7
287,238 - +1.0
287,238 - +0.2
287,287 + +0.1
287,287 + +0.1
287,288 - -2.1
287,302 + -0.9
287,303 - +1.6
287,313 + +0.7
287,313 + -0.5
287,313 + +0.8
287,314 - -0.9
287,319 + +0.1
287,319 + +0.4
287,319 + -0.5
287,320 - -1.3
287,320 - -1.4
287,445 + +0.1
287,446 - -0.8
287,469 - +0.8
287,469 - +0.0
287,516 + AO353_01325 0.15 -1.2
287,517 - AO353_01325 0.15 +0.9
287,562 - AO353_01325 0.21 +0.7
287,562 - AO353_01325 0.21 -1.0
287,664 + AO353_01325 0.34 +0.7
287,664 + AO353_01325 0.34 +0.8
287,665 - AO353_01325 0.34 +0.7
287,666 + AO353_01325 0.34 +1.0
287,667 - AO353_01325 0.34 +1.4
287,667 - AO353_01325 0.34 +0.7
287,769 + AO353_01325 0.47 -0.9
287,879 + AO353_01325 0.61 -0.0
287,879 + AO353_01325 0.61 +0.5
287,885 + AO353_01325 0.62 +1.8
287,886 - AO353_01325 0.62 -0.9
288,018 - AO353_01325 0.79 -0.6
288,175 + -0.0
288,175 + +0.7
288,175 + -0.8
288,176 - +0.8
288,176 - +0.3
288,183 + +0.1
288,183 + +0.1
288,183 + +0.9
288,183 + -0.5
288,184 - -0.2
288,184 - -0.5
288,184 - +0.5
288,197 + +0.1
288,197 + -0.6
288,197 + +1.8
288,197 + -0.3
288,197 + +0.1
288,197 + -1.4
288,197 + +0.2
288,197 + +0.7
288,198 - +0.6
288,198 - +0.6
288,198 - -1.6
288,198 - +2.8
288,198 - -1.3
288,198 - -1.0
288,198 - +0.7
288,198 - +0.3
288,198 - +0.2
288,198 - -0.3
288,198 - -0.6
288,204 + -0.9
288,204 + -0.3
288,204 + -0.5
288,204 + +0.2
288,204 + -1.0
288,204 + +0.8
288,204 + +0.6
288,204 + +0.7
288,204 + +0.1
288,204 + +1.0
288,204 + -2.0
288,204 + +0.0
288,205 - +0.1
288,205 - +0.8
288,205 - +0.0
288,205 - +0.7
288,205 - -2.0
288,205 - +0.2
288,205 - -1.0
288,205 - +0.7
288,205 - +0.8
288,205 - -1.5
288,205 - +2.8
288,205 - -0.5
288,205 - -0.3
288,205 - -1.0
288,242 + AO353_01330 0.13 +0.3
288,242 + AO353_01330 0.13 +0.7
288,334 - AO353_01330 0.39 -0.0
288,400 + AO353_01330 0.57 -1.0
288,400 + AO353_01330 0.57 -0.8
288,401 - AO353_01330 0.57 +0.5
288,419 + AO353_01330 0.62 -0.2
288,419 + AO353_01330 0.62 -2.0
288,419 + AO353_01330 0.62 +0.8
288,419 + AO353_01330 0.62 -0.0
288,419 + AO353_01330 0.62 -0.6
288,420 - AO353_01330 0.63 -0.4
288,420 - AO353_01330 0.63 +1.7
288,470 + AO353_01330 0.77 -0.2
288,470 + AO353_01330 0.77 -0.2
288,470 + AO353_01330 0.77 -1.3
288,470 + AO353_01330 0.77 -0.2
288,470 + AO353_01330 0.77 +0.2
288,471 - AO353_01330 0.77 +0.2
288,471 - AO353_01330 0.77 -0.7
288,471 - AO353_01330 0.77 -1.5
288,471 - AO353_01330 0.77 -0.0
288,471 - +1.8
288,471 - AO353_01330 0.77 +0.1
288,471 - AO353_01330 0.77 -0.6
288,471 - AO353_01330 0.77 +0.7
288,479 + AO353_01330 0.79 +0.6
288,582 + -0.2
288,582 + +0.7

Or see this region's nucleotide sequence