Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00795

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00785 and AO353_00790 are separated by 15 nucleotidesAO353_00790 and AO353_00795 are separated by 379 nucleotidesAO353_00795 and AO353_00800 are separated by 7 nucleotides AO353_00785: AO353_00785 - nitrate transporter, at 177,230 to 178,441 _00785 AO353_00790: AO353_00790 - histidine kinase, at 178,457 to 179,032 _00790 AO353_00795: AO353_00795 - MFS transporter, at 179,412 to 180,623 _00795 AO353_00800: AO353_00800 - protein kinase, at 180,631 to 182,301 _00800 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.751 kb on + strand, within AO353_00790at 178.751 kb on + strand, within AO353_00790at 178.751 kb on + strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 179.102 kb on + strandat 179.112 kb on + strandat 179.112 kb on + strandat 179.112 kb on + strandat 179.113 kb on - strandat 179.188 kb on + strandat 179.192 kb on + strandat 179.193 kb on - strandat 179.196 kb on + strandat 179.196 kb on + strandat 179.218 kb on + strandat 179.254 kb on + strandat 179.254 kb on + strandat 179.255 kb on - strandat 179.255 kb on - strandat 179.255 kb on - strandat 179.469 kb on + strandat 179.469 kb on + strandat 179.469 kb on + strandat 179.470 kb on - strandat 179.496 kb on + strandat 179.496 kb on + strandat 179.497 kb on - strandat 179.497 kb on - strandat 179.716 kb on - strand, within AO353_00795at 179.716 kb on - strand, within AO353_00795at 179.716 kb on - strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.016 kb on - strand, within AO353_00795at 180.016 kb on - strand, within AO353_00795at 180.063 kb on + strand, within AO353_00795at 180.064 kb on - strand, within AO353_00795at 180.064 kb on - strand, within AO353_00795at 180.114 kb on + strand, within AO353_00795at 180.114 kb on + strand, within AO353_00795at 180.114 kb on + strand, within AO353_00795at 180.115 kb on - strand, within AO353_00795at 180.156 kb on + strand, within AO353_00795at 180.156 kb on + strand, within AO353_00795at 180.156 kb on + strand, within AO353_00795at 180.159 kb on + strand, within AO353_00795at 180.159 kb on + strand, within AO353_00795at 180.159 kb on + strand, within AO353_00795at 180.159 kb on + strand, within AO353_00795at 180.160 kb on - strand, within AO353_00795at 180.160 kb on - strand, within AO353_00795at 180.244 kb on + strand, within AO353_00795at 180.245 kb on - strand, within AO353_00795at 180.255 kb on + strand, within AO353_00795at 180.255 kb on + strand, within AO353_00795at 180.255 kb on + strand, within AO353_00795at 180.256 kb on - strand, within AO353_00795at 180.256 kb on - strand, within AO353_00795at 180.256 kb on - strand, within AO353_00795at 180.256 kb on - strand, within AO353_00795at 180.256 kb on - strand, within AO353_00795at 180.256 kb on - strand, within AO353_00795at 180.309 kb on + strand, within AO353_00795at 180.309 kb on + strand, within AO353_00795at 180.309 kb on + strand, within AO353_00795at 180.309 kb on + strand, within AO353_00795at 180.310 kb on - strand, within AO353_00795at 180.310 kb on - strand, within AO353_00795at 180.310 kb on - strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.497 kb on + strand, within AO353_00795at 180.498 kb on - strand, within AO353_00795at 180.498 kb on - strand, within AO353_00795at 180.501 kb on + strand, within AO353_00795at 180.501 kb on + strand, within AO353_00795at 180.501 kb on + strand, within AO353_00795at 180.502 kb on - strandat 180.502 kb on - strandat 180.502 kb on - strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.584 kb on + strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.585 kb on - strandat 180.829 kb on + strand, within AO353_00800at 180.829 kb on + strand, within AO353_00800at 180.829 kb on + strand, within AO353_00800at 180.829 kb on + strand, within AO353_00800at 180.829 kb on + strand, within AO353_00800at 180.830 kb on - strand, within AO353_00800at 180.833 kb on - strand, within AO353_00800at 180.833 kb on - strand, within AO353_00800at 181.004 kb on - strand, within AO353_00800at 181.004 kb on - strand, within AO353_00800at 181.004 kb on - strand, within AO353_00800at 181.004 kb on - strand, within AO353_00800at 181.308 kb on - strand, within AO353_00800at 181.456 kb on + strand, within AO353_00800at 181.456 kb on + strand, within AO353_00800at 181.456 kb on + strand, within AO353_00800at 181.457 kb on - strand, within AO353_00800at 181.457 kb on - strand, within AO353_00800

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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178,456 + -0.7
178,456 + -3.1
178,456 + -1.2
178,456 + -2.3
178,456 + +0.2
178,456 + -1.5
178,456 + -1.9
178,456 + -1.8
178,456 + -2.3
178,456 + -1.0
178,456 + -2.2
178,457 - -1.8
178,457 - -1.2
178,457 - -1.5
178,457 - -1.8
178,457 - -1.4
178,457 - -1.2
178,457 - -1.3
178,457 - -1.1
178,457 - -3.2
178,751 + AO353_00790 0.51 -1.2
178,751 + AO353_00790 0.51 -0.2
178,751 + AO353_00790 0.51 -1.6
178,752 - AO353_00790 0.51 -0.9
178,752 - AO353_00790 0.51 -0.3
178,752 - AO353_00790 0.51 -0.3
178,752 - AO353_00790 0.51 -2.0
178,752 - AO353_00790 0.51 -0.5
178,752 - AO353_00790 0.51 -1.5
178,752 - AO353_00790 0.51 -2.5
178,752 - AO353_00790 0.51 -1.9
178,752 - AO353_00790 0.51 -2.6
178,752 - AO353_00790 0.51 -3.2
178,752 - AO353_00790 0.51 -2.0
178,752 - AO353_00790 0.51 -2.7
178,940 + AO353_00790 0.84 -3.2
178,940 + AO353_00790 0.84 -0.8
178,940 + AO353_00790 0.84 -2.0
178,940 + AO353_00790 0.84 -1.0
178,940 + AO353_00790 0.84 -2.3
178,940 + AO353_00790 0.84 -2.2
178,940 + AO353_00790 0.84 -2.2
178,940 + AO353_00790 0.84 -1.6
178,941 - AO353_00790 0.84 -1.6
178,941 - AO353_00790 0.84 -3.0
178,941 - AO353_00790 0.84 -3.1
178,941 - AO353_00790 0.84 -1.8
179,102 + -0.0
179,112 + +0.0
179,112 + -1.0
179,112 + +0.4
179,113 - -1.3
179,188 + -2.2
179,192 + +1.1
179,193 - -0.7
179,196 + -0.4
179,196 + -1.1
179,218 + +2.3
179,254 + +1.3
179,254 + -2.1
179,255 - +0.8
179,255 - -1.7
179,255 - +2.1
179,469 + -1.4
179,469 + -0.8
179,469 + -0.5
179,470 - +0.5
179,496 + -0.5
179,496 + -0.6
179,497 - -1.0
179,497 - +0.9
179,716 - AO353_00795 0.25 -0.1
179,716 - AO353_00795 0.25 +0.0
179,716 - AO353_00795 0.25 -0.6
180,015 + AO353_00795 0.50 -0.3
180,015 + AO353_00795 0.50 -1.1
180,015 + AO353_00795 0.50 -0.9
180,015 + AO353_00795 0.50 +1.4
180,016 - AO353_00795 0.50 -0.7
180,016 - AO353_00795 0.50 +0.1
180,063 + AO353_00795 0.54 +0.0
180,064 - AO353_00795 0.54 +1.8
180,064 - AO353_00795 0.54 +1.4
180,114 + AO353_00795 0.58 +1.0
180,114 + AO353_00795 0.58 -0.8
180,114 + AO353_00795 0.58 -0.5
180,115 - AO353_00795 0.58 -0.4
180,156 + AO353_00795 0.61 -2.0
180,156 + AO353_00795 0.61 +0.4
180,156 + AO353_00795 0.61 +0.2
180,159 + AO353_00795 0.62 -0.4
180,159 + AO353_00795 0.62 -0.8
180,159 + AO353_00795 0.62 -0.7
180,159 + AO353_00795 0.62 +1.0
180,160 - AO353_00795 0.62 -2.2
180,160 - AO353_00795 0.62 -0.5
180,244 + AO353_00795 0.69 -0.0
180,245 - AO353_00795 0.69 -0.3
180,255 + AO353_00795 0.70 -0.2
180,255 + AO353_00795 0.70 -0.6
180,255 + AO353_00795 0.70 -1.7
180,256 - AO353_00795 0.70 -0.8
180,256 - AO353_00795 0.70 +0.2
180,256 - AO353_00795 0.70 -1.0
180,256 - AO353_00795 0.70 +0.7
180,256 - AO353_00795 0.70 +0.8
180,256 - AO353_00795 0.70 +0.4
180,309 + AO353_00795 0.74 +0.6
180,309 + AO353_00795 0.74 +0.3
180,309 + AO353_00795 0.74 +0.2
180,309 + AO353_00795 0.74 +0.8
180,310 - AO353_00795 0.74 +0.5
180,310 - AO353_00795 0.74 +0.6
180,310 - AO353_00795 0.74 -0.9
180,497 + AO353_00795 0.90 +1.4
180,497 + AO353_00795 0.90 -0.3
180,497 + AO353_00795 0.90 +0.0
180,497 + AO353_00795 0.90 +0.3
180,497 + AO353_00795 0.90 -0.7
180,497 + AO353_00795 0.90 +1.5
180,497 + AO353_00795 0.90 +0.5
180,497 + AO353_00795 0.90 -0.6
180,497 + AO353_00795 0.90 -1.2
180,498 - AO353_00795 0.90 -0.7
180,498 - AO353_00795 0.90 -0.2
180,501 + AO353_00795 0.90 -0.3
180,501 + AO353_00795 0.90 -0.1
180,501 + AO353_00795 0.90 -0.9
180,502 - -0.5
180,502 - -0.4
180,502 - -0.2
180,584 + -2.2
180,584 + -0.8
180,584 + +0.6
180,584 + +0.8
180,584 + +0.2
180,584 + +0.5
180,584 + +0.8
180,584 + +0.4
180,584 + -0.0
180,584 + -1.6
180,584 + +0.2
180,584 + -0.4
180,584 + -0.6
180,584 + -0.3
180,584 + -0.2
180,584 + +0.1
180,584 + -1.9
180,584 + +0.8
180,585 - -0.6
180,585 - +1.2
180,585 - -0.6
180,585 - +0.7
180,585 - -0.1
180,585 - -0.0
180,585 - +3.0
180,585 - -0.8
180,585 - -0.4
180,585 - -1.0
180,585 - +0.8
180,585 - -0.1
180,585 - +1.5
180,585 - -1.0
180,585 - -0.7
180,585 - -0.9
180,585 - +0.4
180,829 + AO353_00800 0.12 -1.2
180,829 + AO353_00800 0.12 -1.1
180,829 + AO353_00800 0.12 +0.9
180,829 + AO353_00800 0.12 +1.1
180,829 + AO353_00800 0.12 -1.3
180,830 - AO353_00800 0.12 +0.1
180,833 - AO353_00800 0.12 -0.3
180,833 - AO353_00800 0.12 +0.8
181,004 - AO353_00800 0.22 +1.2
181,004 - AO353_00800 0.22 -0.6
181,004 - AO353_00800 0.22 +0.4
181,004 - AO353_00800 0.22 -0.0
181,308 - AO353_00800 0.41 -0.5
181,456 + AO353_00800 0.49 +0.8
181,456 + AO353_00800 0.49 -1.9
181,456 + AO353_00800 0.49 +0.1
181,457 - AO353_00800 0.49 -2.5
181,457 - AO353_00800 0.49 -1.0

Or see this region's nucleotide sequence