Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00780 and AO353_00785 are separated by 393 nucleotides AO353_00785 and AO353_00790 are separated by 15 nucleotides AO353_00790 and AO353_00795 are separated by 379 nucleotides
AO353_00780: AO353_00780 - dihydroorotate dehydrogenase (quinone), at 175,817 to 176,836
_00780
AO353_00785: AO353_00785 - nitrate transporter, at 177,230 to 178,441
_00785
AO353_00790: AO353_00790 - histidine kinase, at 178,457 to 179,032
_00790
AO353_00795: AO353_00795 - MFS transporter, at 179,412 to 180,623
_00795
Position (kb) 177
178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 176.832 kb on + strand at 176.833 kb on - strand at 176.833 kb on - strand at 176.867 kb on - strand at 176.879 kb on - strand at 176.879 kb on - strand at 176.881 kb on - strand at 176.951 kb on - strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.055 kb on + strand at 177.056 kb on - strand at 177.080 kb on + strand at 177.080 kb on + strand at 177.080 kb on + strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.095 kb on + strand at 177.139 kb on - strand at 177.145 kb on + strand at 177.146 kb on - strand at 177.146 kb on - strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.390 kb on + strand, within AO353_00785 at 177.390 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.465 kb on - strand at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.692 kb on + strand, within AO353_00785 at 178.040 kb on + strand, within AO353_00785 at 178.235 kb on + strand, within AO353_00785 at 178.236 kb on - strand, within AO353_00785 at 178.353 kb on + strand at 178.354 kb on - strand at 178.379 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.751 kb on + strand, within AO353_00790 at 178.751 kb on + strand, within AO353_00790 at 178.751 kb on + strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 179.102 kb on + strand at 179.112 kb on + strand at 179.112 kb on + strand at 179.112 kb on + strand at 179.113 kb on - strand at 179.188 kb on + strand at 179.192 kb on + strand at 179.193 kb on - strand at 179.196 kb on + strand at 179.196 kb on + strand at 179.218 kb on + strand at 179.254 kb on + strand at 179.254 kb on + strand at 179.255 kb on - strand at 179.255 kb on - strand at 179.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 176,832 + +0.8 176,833 - -1.0 176,833 - +0.8 176,867 - +0.4 176,879 - +0.1 176,879 - -1.2 176,881 - -0.5 176,951 - -0.9 177,007 + +0.7 177,007 + +0.7 177,007 + -2.4 177,007 + -1.6 177,007 + -1.7 177,007 + -0.4 177,007 + -0.4 177,055 + -0.6 177,056 - +1.2 177,080 + +0.5 177,080 + -0.8 177,080 + -0.6 177,081 - -2.8 177,081 - -2.5 177,081 - -2.8 177,081 - -0.4 177,095 + +0.0 177,139 - -1.8 177,145 + -0.9 177,146 - -1.8 177,146 - -2.1 177,224 + +0.1 177,224 + -1.2 177,224 + -0.7 177,224 + -1.8 177,224 + -0.8 177,224 + +0.5 177,224 + +0.1 177,224 + -1.4 177,224 + +0.4 177,224 + +1.0 177,225 - -1.2 177,225 - -3.0 177,225 - -1.0 177,225 - +0.4 177,225 - -0.6 177,225 - -1.1 177,225 - -1.2 177,225 - -0.6 177,225 - -1.0 177,390 + AO353_00785 0.13 +0.2 177,390 + AO353_00785 0.13 -1.0 177,464 + AO353_00785 0.19 -1.7 177,464 + AO353_00785 0.19 -2.3 177,464 + AO353_00785 0.19 +0.1 177,464 + AO353_00785 0.19 -3.0 177,464 + AO353_00785 0.19 +0.4 177,464 + AO353_00785 0.19 +0.2 177,464 + AO353_00785 0.19 -1.6 177,465 - +0.2 177,476 + AO353_00785 0.20 -2.6 177,476 + AO353_00785 0.20 +0.0 177,476 + AO353_00785 0.20 -1.2 177,476 + AO353_00785 0.20 -1.4 177,476 + AO353_00785 0.20 -0.6 177,476 + AO353_00785 0.20 -0.0 177,477 - AO353_00785 0.20 -1.7 177,477 - AO353_00785 0.20 -1.9 177,477 - AO353_00785 0.20 -2.2 177,477 - AO353_00785 0.20 -1.9 177,477 - AO353_00785 0.20 -2.6 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -0.7 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -1.5 177,689 + AO353_00785 0.38 -2.8 177,689 + AO353_00785 0.38 -0.1 177,689 + AO353_00785 0.38 -0.6 177,689 + AO353_00785 0.38 -0.6 177,689 + AO353_00785 0.38 -1.4 177,689 + AO353_00785 0.38 -3.0 177,689 + AO353_00785 0.38 -0.3 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -0.0 177,689 + AO353_00785 0.38 -0.0 177,689 + AO353_00785 0.38 -1.2 177,690 - AO353_00785 0.38 -2.0 177,690 - AO353_00785 0.38 -1.2 177,690 - AO353_00785 0.38 -2.7 177,690 - AO353_00785 0.38 -1.4 177,690 - AO353_00785 0.38 -0.2 177,692 + AO353_00785 0.38 -0.9 178,040 + AO353_00785 0.67 +0.1 178,235 + AO353_00785 0.83 +1.6 178,236 - AO353_00785 0.83 -3.9 178,353 + +0.2 178,354 - -0.7 178,379 + -0.0 178,456 + -0.7 178,456 + -3.1 178,456 + -1.2 178,456 + -2.3 178,456 + +0.2 178,456 + -1.5 178,456 + -1.9 178,456 + -1.8 178,456 + -2.3 178,456 + -1.0 178,456 + -2.2 178,457 - -1.8 178,457 - -1.2 178,457 - -1.5 178,457 - -1.8 178,457 - -1.4 178,457 - -1.2 178,457 - -1.3 178,457 - -1.1 178,457 - -3.2 178,751 + AO353_00790 0.51 -1.2 178,751 + AO353_00790 0.51 -0.2 178,751 + AO353_00790 0.51 -1.6 178,752 - AO353_00790 0.51 -0.9 178,752 - AO353_00790 0.51 -0.3 178,752 - AO353_00790 0.51 -0.3 178,752 - AO353_00790 0.51 -2.0 178,752 - AO353_00790 0.51 -0.5 178,752 - AO353_00790 0.51 -1.5 178,752 - AO353_00790 0.51 -2.5 178,752 - AO353_00790 0.51 -1.9 178,752 - AO353_00790 0.51 -2.6 178,752 - AO353_00790 0.51 -3.2 178,752 - AO353_00790 0.51 -2.0 178,752 - AO353_00790 0.51 -2.7 178,940 + AO353_00790 0.84 -3.2 178,940 + AO353_00790 0.84 -0.8 178,940 + AO353_00790 0.84 -2.0 178,940 + AO353_00790 0.84 -1.0 178,940 + AO353_00790 0.84 -2.3 178,940 + AO353_00790 0.84 -2.2 178,940 + AO353_00790 0.84 -2.2 178,940 + AO353_00790 0.84 -1.6 178,941 - AO353_00790 0.84 -1.6 178,941 - AO353_00790 0.84 -3.0 178,941 - AO353_00790 0.84 -3.1 178,941 - AO353_00790 0.84 -1.8 179,102 + -0.0 179,112 + +0.0 179,112 + -1.0 179,112 + +0.4 179,113 - -1.3 179,188 + -2.2 179,192 + +1.1 179,193 - -0.7 179,196 + -0.4 179,196 + -1.1 179,218 + +2.3 179,254 + +1.3 179,254 + -2.1 179,255 - +0.8 179,255 - -1.7 179,255 - +2.1
Or see this region's nucleotide sequence