Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05100 and MMP_RS05105 are separated by 159 nucleotides MMP_RS05105 and MMP_RS05110 are separated by 4 nucleotides MMP_RS05110 and MMP_RS05115 are separated by 10 nucleotides
MMP_RS05100: MMP_RS05100 - CO dehydrogenase/acetyl-CoA synthase complex subunit alpha, at 970,041 to 972,383
_RS05100
MMP_RS05105: MMP_RS05105 - thymidylate synthase, at 972,543 to 973,418
_RS05105
MMP_RS05110: MMP_RS05110 - 16S ribosomal RNA methyltransferase A, at 973,423 to 974,226
_RS05110
MMP_RS05115: MMP_RS05115 - 50S ribosomal protein L11 methyltransferase, at 974,237 to 975,124
_RS05115
Position (kb) 972
973
974 Strain fitness (log2 ratio) -1
0
1 at 971.544 kb on - strand, within MMP_RS05100 at 971.545 kb on + strand, within MMP_RS05100 at 971.545 kb on + strand, within MMP_RS05100 at 971.552 kb on - strand, within MMP_RS05100 at 971.553 kb on + strand, within MMP_RS05100 at 971.614 kb on + strand, within MMP_RS05100 at 971.632 kb on + strand, within MMP_RS05100 at 971.673 kb on - strand, within MMP_RS05100 at 971.674 kb on + strand, within MMP_RS05100 at 971.884 kb on + strand, within MMP_RS05100 at 971.953 kb on + strand, within MMP_RS05100 at 971.953 kb on + strand, within MMP_RS05100 at 972.006 kb on - strand, within MMP_RS05100 at 972.007 kb on + strand, within MMP_RS05100 at 972.149 kb on - strand at 972.150 kb on + strand at 972.153 kb on - strand at 972.153 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.421 kb on + strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.423 kb on + strand at 972.426 kb on - strand at 972.427 kb on + strand at 972.427 kb on + strand at 972.435 kb on + strand at 972.586 kb on + strand at 972.586 kb on + strand at 972.587 kb on - strand at 972.587 kb on - strand at 972.591 kb on - strand at 972.591 kb on - strand at 972.633 kb on - strand, within MMP_RS05105 at 972.791 kb on - strand, within MMP_RS05105 at 972.842 kb on - strand, within MMP_RS05105 at 972.915 kb on - strand, within MMP_RS05105 at 972.932 kb on + strand, within MMP_RS05105 at 973.021 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.206 kb on - strand, within MMP_RS05105 at 973.206 kb on - strand, within MMP_RS05105 at 973.206 kb on - strand, within MMP_RS05105 at 973.210 kb on + strand, within MMP_RS05105 at 973.212 kb on - strand, within MMP_RS05105 at 973.213 kb on + strand, within MMP_RS05105 at 973.213 kb on + strand, within MMP_RS05105 at 973.217 kb on - strand, within MMP_RS05105 at 973.217 kb on - strand, within MMP_RS05105 at 973.280 kb on + strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.298 kb on - strand, within MMP_RS05105 at 973.299 kb on + strand, within MMP_RS05105 at 973.300 kb on - strand, within MMP_RS05105 at 973.421 kb on - strand at 973.453 kb on - strand at 973.506 kb on - strand, within MMP_RS05110 at 973.671 kb on + strand, within MMP_RS05110 at 973.711 kb on - strand, within MMP_RS05110 at 973.712 kb on + strand, within MMP_RS05110 at 973.775 kb on - strand, within MMP_RS05110 at 973.776 kb on + strand, within MMP_RS05110 at 973.810 kb on + strand, within MMP_RS05110 at 973.854 kb on + strand, within MMP_RS05110 at 973.987 kb on - strand, within MMP_RS05110 at 973.987 kb on - strand, within MMP_RS05110 at 974.243 kb on + strand at 974.243 kb on + strand at 974.249 kb on - strand at 974.365 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.414 kb on + strand, within MMP_RS05115 at 974.415 kb on - strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 971,544 - MMP_RS05100 0.64 -0.6 971,545 + MMP_RS05100 0.64 -0.5 971,545 + MMP_RS05100 0.64 -0.9 971,552 - MMP_RS05100 0.64 -0.5 971,553 + MMP_RS05100 0.65 -0.3 971,614 + MMP_RS05100 0.67 +0.0 971,632 + MMP_RS05100 0.68 -0.3 971,673 - MMP_RS05100 0.70 -1.5 971,674 + MMP_RS05100 0.70 -0.4 971,884 + MMP_RS05100 0.79 -0.1 971,953 + MMP_RS05100 0.82 -0.8 971,953 + MMP_RS05100 0.82 +0.1 972,006 - MMP_RS05100 0.84 -0.6 972,007 + MMP_RS05100 0.84 +0.2 972,149 - -0.6 972,150 + -0.3 972,153 - +0.0 972,153 - -0.2 972,420 - -0.3 972,420 - -0.4 972,420 - -0.6 972,420 - -0.7 972,420 - -1.3 972,421 + -0.6 972,422 - -0.5 972,422 - -0.8 972,422 - -0.9 972,422 - -0.3 972,422 - -0.9 972,423 + -0.9 972,426 - -0.2 972,427 + +0.3 972,427 + +0.1 972,435 + +0.2 972,586 + -0.3 972,586 + +0.2 972,587 - +0.0 972,587 - +0.5 972,591 - -0.6 972,591 - +0.2 972,633 - MMP_RS05105 0.10 +0.6 972,791 - MMP_RS05105 0.28 +0.3 972,842 - MMP_RS05105 0.34 +0.1 972,915 - MMP_RS05105 0.42 +0.1 972,932 + MMP_RS05105 0.44 +0.0 973,021 - MMP_RS05105 0.55 +0.2 973,042 - MMP_RS05105 0.57 -0.0 973,042 - MMP_RS05105 0.57 +0.8 973,042 - MMP_RS05105 0.57 -0.2 973,042 - MMP_RS05105 0.57 +0.0 973,042 - MMP_RS05105 0.57 -0.6 973,043 + MMP_RS05105 0.57 +0.3 973,043 + MMP_RS05105 0.57 +0.2 973,043 + MMP_RS05105 0.57 +0.1 973,043 + MMP_RS05105 0.57 +0.6 973,206 - MMP_RS05105 0.76 +0.5 973,206 - MMP_RS05105 0.76 -0.1 973,206 - MMP_RS05105 0.76 -0.0 973,210 + MMP_RS05105 0.76 +0.2 973,212 - MMP_RS05105 0.76 -0.3 973,213 + MMP_RS05105 0.76 +0.3 973,213 + MMP_RS05105 0.76 -0.3 973,217 - MMP_RS05105 0.77 +0.4 973,217 - MMP_RS05105 0.77 +0.3 973,280 + MMP_RS05105 0.84 +0.1 973,287 - MMP_RS05105 0.85 -0.1 973,287 - MMP_RS05105 0.85 -0.6 973,287 - MMP_RS05105 0.85 +0.4 973,298 - MMP_RS05105 0.86 -0.3 973,299 + MMP_RS05105 0.86 +0.1 973,300 - MMP_RS05105 0.86 -0.6 973,421 - +1.5 973,453 - +0.1 973,506 - MMP_RS05110 0.10 -0.2 973,671 + MMP_RS05110 0.31 +0.1 973,711 - MMP_RS05110 0.36 -0.3 973,712 + MMP_RS05110 0.36 -0.1 973,775 - MMP_RS05110 0.44 +0.1 973,776 + MMP_RS05110 0.44 +0.0 973,810 + MMP_RS05110 0.48 -0.3 973,854 + MMP_RS05110 0.54 -0.4 973,987 - MMP_RS05110 0.70 -0.2 973,987 - MMP_RS05110 0.70 +0.0 974,243 + -0.2 974,243 + +0.3 974,249 - +0.2 974,365 - MMP_RS05115 0.14 +0.0 974,413 - MMP_RS05115 0.20 +0.6 974,413 - MMP_RS05115 0.20 +0.0 974,413 - MMP_RS05115 0.20 -0.3 974,413 - MMP_RS05115 0.20 +0.4 974,414 + MMP_RS05115 0.20 +0.1 974,415 - MMP_RS05115 0.20 -0.1 974,416 + MMP_RS05115 0.20 +0.0 974,416 + MMP_RS05115 0.20 +0.1 974,416 + MMP_RS05115 0.20 +0.9 974,416 + MMP_RS05115 0.20 +0.4 974,417 - MMP_RS05115 0.20 -0.4 974,417 - MMP_RS05115 0.20 +0.1 974,417 - MMP_RS05115 0.20 -0.3 974,417 - MMP_RS05115 0.20 +0.2 974,418 + MMP_RS05115 0.20 -0.3 974,418 + MMP_RS05115 0.20 +0.1 974,418 + MMP_RS05115 0.20 -0.3
Or see this region's nucleotide sequence