Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04590

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04585 and MMP_RS04590 are separated by 27 nucleotidesMMP_RS04590 and MMP_RS04595 are separated by 30 nucleotidesMMP_RS04595 and MMP_RS04600 are separated by 109 nucleotides MMP_RS04585: MMP_RS04585 - AIR synthase related protein, at 875,462 to 876,343 _RS04585 MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336 _RS04590 MMP_RS04595: MMP_RS04595 - hypothetical protein, at 877,367 to 877,864 _RS04595 MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140 _RS04600 Position (kb) 876 877 878Strain fitness (log2 ratio) -3 -2 -1 0 1at 875.382 kb on - strandat 875.383 kb on + strandat 875.388 kb on - strandat 875.388 kb on - strandat 875.389 kb on + strandat 875.391 kb on + strandat 875.391 kb on + strandat 875.394 kb on - strandat 875.395 kb on + strandat 875.411 kb on + strandat 875.425 kb on - strandat 875.426 kb on + strandat 875.426 kb on + strandat 875.428 kb on + strandat 875.444 kb on + strandat 875.489 kb on - strandat 875.490 kb on + strandat 875.503 kb on - strandat 875.503 kb on - strandat 875.516 kb on + strandat 875.598 kb on - strand, within MMP_RS04585at 875.621 kb on + strand, within MMP_RS04585at 875.668 kb on - strand, within MMP_RS04585at 875.678 kb on + strand, within MMP_RS04585at 875.678 kb on + strand, within MMP_RS04585at 875.766 kb on - strand, within MMP_RS04585at 875.767 kb on + strand, within MMP_RS04585at 875.767 kb on + strand, within MMP_RS04585at 875.797 kb on - strand, within MMP_RS04585at 875.797 kb on - strand, within MMP_RS04585at 875.798 kb on + strand, within MMP_RS04585at 875.809 kb on + strand, within MMP_RS04585at 875.811 kb on - strand, within MMP_RS04585at 875.892 kb on - strand, within MMP_RS04585at 875.893 kb on + strand, within MMP_RS04585at 875.925 kb on - strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.949 kb on - strand, within MMP_RS04585at 875.959 kb on - strand, within MMP_RS04585at 876.007 kb on + strand, within MMP_RS04585at 876.007 kb on + strand, within MMP_RS04585at 876.166 kb on + strand, within MMP_RS04585at 876.166 kb on + strand, within MMP_RS04585at 876.196 kb on - strand, within MMP_RS04585at 876.196 kb on - strand, within MMP_RS04585at 876.220 kb on - strand, within MMP_RS04585at 876.220 kb on - strand, within MMP_RS04585at 876.220 kb on - strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.250 kb on + strand, within MMP_RS04585at 876.267 kb on - strandat 876.289 kb on - strandat 876.289 kb on - strandat 876.295 kb on - strandat 876.315 kb on - strandat 876.316 kb on + strandat 876.316 kb on + strandat 876.335 kb on + strandat 876.366 kb on + strandat 876.407 kb on + strandat 876.501 kb on - strand, within MMP_RS04590at 876.501 kb on - strand, within MMP_RS04590at 876.502 kb on + strand, within MMP_RS04590at 876.506 kb on - strand, within MMP_RS04590at 876.507 kb on + strand, within MMP_RS04590at 876.507 kb on + strand, within MMP_RS04590at 876.516 kb on - strand, within MMP_RS04590at 876.527 kb on - strand, within MMP_RS04590at 876.528 kb on + strand, within MMP_RS04590at 876.542 kb on + strand, within MMP_RS04590at 876.546 kb on + strand, within MMP_RS04590at 876.560 kb on - strand, within MMP_RS04590at 876.560 kb on - strand, within MMP_RS04590at 876.607 kb on - strand, within MMP_RS04590at 876.608 kb on + strand, within MMP_RS04590at 876.632 kb on + strand, within MMP_RS04590at 876.659 kb on - strand, within MMP_RS04590at 876.687 kb on + strand, within MMP_RS04590at 876.691 kb on - strand, within MMP_RS04590at 876.955 kb on + strand, within MMP_RS04590at 876.998 kb on - strand, within MMP_RS04590at 877.043 kb on - strand, within MMP_RS04590at 877.120 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.138 kb on - strand, within MMP_RS04590at 877.170 kb on - strand, within MMP_RS04590at 877.174 kb on - strand, within MMP_RS04590at 877.209 kb on + strand, within MMP_RS04590at 877.233 kb on + strand, within MMP_RS04590at 877.272 kb on + strandat 877.363 kb on - strandat 877.482 kb on + strand, within MMP_RS04595at 877.539 kb on - strand, within MMP_RS04595at 877.550 kb on - strand, within MMP_RS04595at 877.560 kb on + strand, within MMP_RS04595at 877.571 kb on - strand, within MMP_RS04595at 877.743 kb on + strand, within MMP_RS04595at 877.766 kb on + strand, within MMP_RS04595at 877.846 kb on + strandat 877.846 kb on + strandat 877.895 kb on - strandat 877.910 kb on - strandat 877.915 kb on - strandat 877.957 kb on - strandat 877.960 kb on - strandat 877.994 kb on - strandat 877.995 kb on + strandat 877.995 kb on + strandat 877.997 kb on - strandat 878.013 kb on - strandat 878.013 kb on - strandat 878.013 kb on - strandat 878.027 kb on + strandat 878.066 kb on + strandat 878.067 kb on - strandat 878.118 kb on + strand, within MMP_RS04600at 878.118 kb on + strand, within MMP_RS04600at 878.137 kb on + strand, within MMP_RS04600at 878.137 kb on + strand, within MMP_RS04600at 878.169 kb on - strand, within MMP_RS04600at 878.169 kb on - strand, within MMP_RS04600at 878.171 kb on - strand, within MMP_RS04600at 878.171 kb on - strand, within MMP_RS04600at 878.172 kb on + strand, within MMP_RS04600at 878.173 kb on - strand, within MMP_RS04600at 878.182 kb on - strand, within MMP_RS04600

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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875,382 - -0.2
875,383 + +1.6
875,388 - +0.1
875,388 - -1.0
875,389 + -0.2
875,391 + +0.4
875,391 + +0.2
875,394 - +0.5
875,395 + +0.7
875,411 + +0.2
875,425 - -0.6
875,426 + +0.0
875,426 + +0.8
875,428 + +0.1
875,444 + -0.5
875,489 - -2.0
875,490 + +0.1
875,503 - -1.2
875,503 - -1.8
875,516 + -1.0
875,598 - MMP_RS04585 0.15 -0.5
875,621 + MMP_RS04585 0.18 -0.3
875,668 - MMP_RS04585 0.23 +0.3
875,678 + MMP_RS04585 0.24 -1.6
875,678 + MMP_RS04585 0.24 -0.8
875,766 - MMP_RS04585 0.34 -1.6
875,767 + MMP_RS04585 0.35 -1.7
875,767 + MMP_RS04585 0.35 -2.0
875,797 - MMP_RS04585 0.38 -1.7
875,797 - MMP_RS04585 0.38 -2.4
875,798 + MMP_RS04585 0.38 -2.4
875,809 + MMP_RS04585 0.39 -1.7
875,811 - MMP_RS04585 0.40 -2.5
875,892 - MMP_RS04585 0.49 -2.8
875,893 + MMP_RS04585 0.49 -3.0
875,925 - MMP_RS04585 0.52 -2.7
875,926 + MMP_RS04585 0.53 -1.0
875,926 + MMP_RS04585 0.53 -1.9
875,926 + MMP_RS04585 0.53 -0.2
875,926 + MMP_RS04585 0.53 -0.3
875,949 - MMP_RS04585 0.55 -1.6
875,959 - MMP_RS04585 0.56 -1.4
876,007 + MMP_RS04585 0.62 -1.0
876,007 + MMP_RS04585 0.62 -1.0
876,166 + MMP_RS04585 0.80 -2.3
876,166 + MMP_RS04585 0.80 -1.4
876,196 - MMP_RS04585 0.83 -1.5
876,196 - MMP_RS04585 0.83 +0.0
876,220 - MMP_RS04585 0.86 -2.1
876,220 - MMP_RS04585 0.86 -1.1
876,220 - MMP_RS04585 0.86 -1.3
876,221 + MMP_RS04585 0.86 -1.5
876,221 + MMP_RS04585 0.86 -2.4
876,221 + MMP_RS04585 0.86 -2.0
876,221 + MMP_RS04585 0.86 -1.2
876,221 + MMP_RS04585 0.86 -1.3
876,250 + MMP_RS04585 0.89 -0.9
876,267 - -1.9
876,289 - +0.0
876,289 - -1.0
876,295 - -1.3
876,315 - +0.8
876,316 + -0.3
876,316 + +0.3
876,335 + +0.0
876,366 + -0.1
876,407 + -0.3
876,501 - MMP_RS04590 0.13 +0.1
876,501 - MMP_RS04590 0.13 -0.5
876,502 + MMP_RS04590 0.14 +0.2
876,506 - MMP_RS04590 0.14 +0.4
876,507 + MMP_RS04590 0.14 -0.3
876,507 + MMP_RS04590 0.14 +0.4
876,516 - MMP_RS04590 0.15 +0.4
876,527 - MMP_RS04590 0.16 +0.2
876,528 + MMP_RS04590 0.16 -0.3
876,542 + MMP_RS04590 0.18 +0.1
876,546 + MMP_RS04590 0.18 -0.2
876,560 - MMP_RS04590 0.20 -0.1
876,560 - MMP_RS04590 0.20 +0.4
876,607 - MMP_RS04590 0.24 -0.3
876,608 + MMP_RS04590 0.25 -0.2
876,632 + MMP_RS04590 0.27 +0.2
876,659 - MMP_RS04590 0.30 -0.4
876,687 + MMP_RS04590 0.33 +0.4
876,691 - MMP_RS04590 0.33 +0.3
876,955 + MMP_RS04590 0.60 -0.1
876,998 - MMP_RS04590 0.65 -0.0
877,043 - MMP_RS04590 0.70 +0.0
877,120 + MMP_RS04590 0.78 +0.1
877,133 + MMP_RS04590 0.79 +0.3
877,133 + MMP_RS04590 0.79 +0.1
877,133 + MMP_RS04590 0.79 +0.1
877,138 - MMP_RS04590 0.79 -0.0
877,170 - MMP_RS04590 0.83 +0.0
877,174 - MMP_RS04590 0.83 +0.1
877,209 + MMP_RS04590 0.87 +0.0
877,233 + MMP_RS04590 0.89 +0.0
877,272 + -0.1
877,363 - +0.1
877,482 + MMP_RS04595 0.23 -0.6
877,539 - MMP_RS04595 0.35 +0.1
877,550 - MMP_RS04595 0.37 +0.2
877,560 + MMP_RS04595 0.39 -0.2
877,571 - MMP_RS04595 0.41 -0.6
877,743 + MMP_RS04595 0.76 -0.0
877,766 + MMP_RS04595 0.80 +0.6
877,846 + -0.2
877,846 + +0.1
877,895 - -0.2
877,910 - +0.0
877,915 - +1.0
877,957 - +0.1
877,960 - -0.0
877,994 - -0.1
877,995 + +0.2
877,995 + +0.1
877,997 - +0.0
878,013 - -0.3
878,013 - +0.3
878,013 - +0.2
878,027 + -0.9
878,066 + +0.3
878,067 - -0.1
878,118 + MMP_RS04600 0.12 -0.4
878,118 + MMP_RS04600 0.12 +0.1
878,137 + MMP_RS04600 0.14 +0.7
878,137 + MMP_RS04600 0.14 -0.1
878,169 - MMP_RS04600 0.17 -0.1
878,169 - MMP_RS04600 0.17 -0.4
878,171 - MMP_RS04600 0.17 +0.2
878,171 - MMP_RS04600 0.17 +0.3
878,172 + MMP_RS04600 0.17 +0.3
878,173 - MMP_RS04600 0.17 +0.2
878,182 - MMP_RS04600 0.18 +0.1

Or see this region's nucleotide sequence