Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides MMP_RS04195 and MMP_RS04200 are separated by 30 nucleotides MMP_RS04200 and MMP_RS04205 are separated by 130 nucleotides
MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842
_RS04190
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
MMP_RS04200: MMP_RS04200 - DUF111 family protein, at 798,627 to 799,346
_RS04200
MMP_RS04205: MMP_RS04205 - carboxymuconolactone decarboxylase family protein, at 799,477 to 800,229
_RS04205
Position (kb) 798
799
800 Strain fitness (log2 ratio) -1
0
1 at 797.709 kb on + strand, within MMP_RS04190 at 797.723 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.810 kb on + strand at 797.810 kb on + strand at 797.818 kb on - strand at 797.821 kb on + strand at 797.821 kb on + strand at 797.859 kb on - strand at 797.959 kb on + strand at 797.959 kb on + strand at 798.002 kb on + strand at 798.090 kb on + strand at 798.090 kb on + strand at 798.179 kb on + strand, within MMP_RS04195 at 798.301 kb on - strand, within MMP_RS04195 at 798.508 kb on - strand, within MMP_RS04195 at 798.511 kb on - strand, within MMP_RS04195 at 798.574 kb on - strand at 798.578 kb on - strand at 798.579 kb on + strand at 798.608 kb on + strand at 798.612 kb on + strand at 798.622 kb on - strand at 798.623 kb on + strand at 798.639 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.743 kb on + strand, within MMP_RS04200 at 798.759 kb on + strand, within MMP_RS04200 at 798.782 kb on - strand, within MMP_RS04200 at 798.806 kb on - strand, within MMP_RS04200 at 798.807 kb on + strand, within MMP_RS04200 at 798.837 kb on - strand, within MMP_RS04200 at 798.858 kb on + strand, within MMP_RS04200 at 798.886 kb on - strand, within MMP_RS04200 at 799.090 kb on - strand, within MMP_RS04200 at 799.215 kb on + strand, within MMP_RS04200 at 799.219 kb on - strand, within MMP_RS04200 at 799.273 kb on - strand, within MMP_RS04200 at 799.470 kb on - strand at 799.630 kb on + strand, within MMP_RS04205 at 799.684 kb on + strand, within MMP_RS04205 at 799.762 kb on - strand, within MMP_RS04205 at 799.763 kb on + strand, within MMP_RS04205 at 799.763 kb on + strand, within MMP_RS04205 at 799.814 kb on - strand, within MMP_RS04205 at 799.854 kb on - strand, within MMP_RS04205 at 799.972 kb on - strand, within MMP_RS04205 at 800.167 kb on - strand at 800.167 kb on - strand at 800.171 kb on - strand at 800.171 kb on - strand at 800.217 kb on + strand at 800.247 kb on + strand at 800.247 kb on + strand at 800.261 kb on + strand at 800.266 kb on - strand at 800.267 kb on + strand at 800.270 kb on + strand at 800.294 kb on - strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.297 kb on + strand at 800.297 kb on + strand at 800.300 kb on - strand at 800.308 kb on - strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.312 kb on - strand at 800.313 kb on + strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.317 kb on - strand at 800.317 kb on - strand at 800.318 kb on + strand at 800.318 kb on + strand at 800.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 797,709 + MMP_RS04190 0.74 -0.1 797,723 - MMP_RS04190 0.77 +0.1 797,728 - MMP_RS04190 0.78 +0.1 797,728 - MMP_RS04190 0.78 -0.2 797,810 + -0.1 797,810 + -0.3 797,818 - +1.0 797,821 + +0.1 797,821 + -0.0 797,859 - +0.5 797,959 + +0.1 797,959 + +0.1 798,002 + -0.1 798,090 + +0.3 798,090 + +0.3 798,179 + MMP_RS04195 0.22 +0.5 798,301 - MMP_RS04195 0.45 +0.1 798,508 - MMP_RS04195 0.83 +0.6 798,511 - MMP_RS04195 0.84 +0.0 798,574 - -0.1 798,578 - +0.3 798,579 + +0.4 798,608 + -0.1 798,612 + -0.0 798,622 - -0.1 798,623 + +0.0 798,639 + +0.2 798,687 + +0.2 798,687 + +0.4 798,743 + MMP_RS04200 0.16 -0.3 798,759 + MMP_RS04200 0.18 -0.2 798,782 - MMP_RS04200 0.22 -0.2 798,806 - MMP_RS04200 0.25 -0.4 798,807 + MMP_RS04200 0.25 +0.4 798,837 - MMP_RS04200 0.29 -1.5 798,858 + MMP_RS04200 0.32 +0.0 798,886 - MMP_RS04200 0.36 +0.3 799,090 - MMP_RS04200 0.64 +0.1 799,215 + MMP_RS04200 0.82 -0.3 799,219 - MMP_RS04200 0.82 +0.1 799,273 - MMP_RS04200 0.90 -0.2 799,470 - -0.1 799,630 + MMP_RS04205 0.20 +0.1 799,684 + MMP_RS04205 0.27 -0.4 799,762 - MMP_RS04205 0.38 -0.3 799,763 + MMP_RS04205 0.38 +0.3 799,763 + MMP_RS04205 0.38 +0.4 799,814 - MMP_RS04205 0.45 +0.9 799,854 - MMP_RS04205 0.50 -0.4 799,972 - MMP_RS04205 0.66 +0.3 800,167 - +0.0 800,167 - -0.3 800,171 - -0.1 800,171 - -0.0 800,217 + -0.1 800,247 + -0.1 800,247 + -0.0 800,261 + +0.1 800,266 - -0.2 800,267 + -0.4 800,270 + +0.2 800,294 - +0.2 800,295 + -0.1 800,295 + +0.0 800,295 + -0.6 800,295 + +0.1 800,297 + +0.1 800,297 + +0.5 800,300 - -0.1 800,308 - -0.2 800,309 + -0.1 800,309 + -0.4 800,309 + -0.0 800,309 + +0.2 800,309 + -0.0 800,309 + +0.0 800,309 + -0.2 800,312 - +0.0 800,313 + -0.0 800,315 - -0.1 800,315 - -0.5 800,315 - +0.0 800,315 - -0.2 800,317 - +0.1 800,317 - +0.2 800,318 + +0.4 800,318 + +0.0 800,341 + -0.1
Or see this region's nucleotide sequence