Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04140 and MMP_RS04145 are separated by 123 nucleotides MMP_RS04145 and MMP_RS04150 are separated by 124 nucleotides MMP_RS04150 and MMP_RS04155 are separated by 58 nucleotides
MMP_RS04140: MMP_RS04140 - phospholipid methyltransferase, at 786,821 to 787,339
_RS04140
MMP_RS04145: MMP_RS04145 - hypothetical protein, at 787,463 to 787,987
_RS04145
MMP_RS04150: MMP_RS04150 - MFS transporter, at 788,112 to 789,326
_RS04150
MMP_RS04155: MMP_RS04155 - MFS transporter, at 789,385 to 790,590
_RS04155
Position (kb) 788
789
790 Strain fitness (log2 ratio) -1
0
1 at 787.129 kb on + strand, within MMP_RS04140 at 787.131 kb on + strand, within MMP_RS04140 at 787.164 kb on + strand, within MMP_RS04140 at 787.180 kb on + strand, within MMP_RS04140 at 787.180 kb on + strand, within MMP_RS04140 at 787.228 kb on + strand, within MMP_RS04140 at 787.256 kb on + strand, within MMP_RS04140 at 787.301 kb on - strand at 787.301 kb on - strand at 787.310 kb on - strand at 787.311 kb on + strand at 787.312 kb on - strand at 787.319 kb on + strand at 787.323 kb on - strand at 787.333 kb on - strand at 787.344 kb on - strand at 787.347 kb on + strand at 787.350 kb on + strand at 787.387 kb on - strand at 787.387 kb on - strand at 787.440 kb on - strand at 787.446 kb on + strand at 787.648 kb on + strand, within MMP_RS04145 at 787.940 kb on + strand at 787.991 kb on - strand at 787.991 kb on - strand at 787.992 kb on + strand at 788.069 kb on - strand at 788.069 kb on - strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.071 kb on - strand at 788.071 kb on - strand at 788.071 kb on - strand at 788.072 kb on + strand at 788.078 kb on - strand at 788.108 kb on - strand at 788.138 kb on + strand at 788.225 kb on + strand at 788.242 kb on - strand, within MMP_RS04150 at 788.247 kb on + strand, within MMP_RS04150 at 788.354 kb on - strand, within MMP_RS04150 at 788.354 kb on - strand, within MMP_RS04150 at 788.404 kb on - strand, within MMP_RS04150 at 788.405 kb on + strand, within MMP_RS04150 at 788.468 kb on - strand, within MMP_RS04150 at 788.612 kb on - strand, within MMP_RS04150 at 788.821 kb on - strand, within MMP_RS04150 at 788.825 kb on - strand, within MMP_RS04150 at 788.825 kb on - strand, within MMP_RS04150 at 788.829 kb on - strand, within MMP_RS04150 at 788.830 kb on + strand, within MMP_RS04150 at 788.863 kb on - strand, within MMP_RS04150 at 789.056 kb on - strand, within MMP_RS04150 at 789.057 kb on + strand, within MMP_RS04150 at 789.230 kb on - strand at 789.311 kb on - strand at 789.324 kb on - strand at 789.334 kb on + strand at 789.339 kb on - strand at 789.340 kb on + strand at 789.340 kb on + strand at 789.340 kb on + strand at 789.340 kb on + strand at 789.404 kb on - strand at 789.404 kb on - strand at 789.429 kb on + strand at 789.490 kb on + strand at 789.496 kb on - strand at 789.497 kb on + strand at 789.511 kb on + strand, within MMP_RS04155 at 789.516 kb on - strand, within MMP_RS04155 at 789.517 kb on + strand, within MMP_RS04155 at 789.517 kb on + strand, within MMP_RS04155 at 789.550 kb on - strand, within MMP_RS04155 at 789.551 kb on + strand, within MMP_RS04155 at 789.551 kb on + strand, within MMP_RS04155 at 789.558 kb on + strand, within MMP_RS04155 at 789.566 kb on - strand, within MMP_RS04155 at 789.567 kb on + strand, within MMP_RS04155 at 789.567 kb on + strand, within MMP_RS04155 at 789.631 kb on + strand, within MMP_RS04155 at 789.662 kb on - strand, within MMP_RS04155 at 789.663 kb on + strand, within MMP_RS04155 at 789.663 kb on + strand, within MMP_RS04155 at 789.670 kb on - strand, within MMP_RS04155 at 789.671 kb on + strand, within MMP_RS04155 at 789.747 kb on - strand, within MMP_RS04155 at 789.748 kb on + strand, within MMP_RS04155 at 789.748 kb on + strand, within MMP_RS04155 at 789.754 kb on - strand, within MMP_RS04155 at 789.754 kb on - strand, within MMP_RS04155 at 789.754 kb on - strand, within MMP_RS04155 at 789.755 kb on + strand, within MMP_RS04155 at 789.755 kb on + strand, within MMP_RS04155 at 789.755 kb on + strand, within MMP_RS04155 at 789.757 kb on + strand, within MMP_RS04155 at 789.894 kb on + strand, within MMP_RS04155 at 789.895 kb on - strand, within MMP_RS04155 at 789.896 kb on + strand, within MMP_RS04155 at 789.896 kb on + strand, within MMP_RS04155 at 789.897 kb on - strand, within MMP_RS04155 at 789.897 kb on - strand, within MMP_RS04155 at 789.897 kb on - strand, within MMP_RS04155 at 789.903 kb on + strand, within MMP_RS04155 at 790.123 kb on + strand, within MMP_RS04155 at 790.228 kb on + strand, within MMP_RS04155 at 790.266 kb on - strand, within MMP_RS04155 at 790.270 kb on - strand, within MMP_RS04155
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 787,129 + MMP_RS04140 0.59 +0.3 787,131 + MMP_RS04140 0.60 +1.3 787,164 + MMP_RS04140 0.66 -0.5 787,180 + MMP_RS04140 0.69 -0.3 787,180 + MMP_RS04140 0.69 -0.1 787,228 + MMP_RS04140 0.78 -0.2 787,256 + MMP_RS04140 0.84 +0.2 787,301 - +0.1 787,301 - +0.3 787,310 - +0.2 787,311 + +1.2 787,312 - +1.1 787,319 + -0.1 787,323 - +0.1 787,333 - +0.3 787,344 - -0.1 787,347 + -0.4 787,350 + +0.3 787,387 - +0.0 787,387 - -0.5 787,440 - +0.6 787,446 + -0.2 787,648 + MMP_RS04145 0.35 -0.3 787,940 + +0.1 787,991 - +0.4 787,991 - +0.5 787,992 + +0.1 788,069 - +0.1 788,069 - -0.2 788,070 + +0.0 788,070 + -0.4 788,070 + +0.4 788,070 + -0.2 788,070 + -0.2 788,071 - +0.1 788,071 - +0.2 788,071 - +0.4 788,072 + +0.0 788,078 - -0.2 788,108 - +0.2 788,138 + -0.5 788,225 + -0.3 788,242 - MMP_RS04150 0.11 -0.1 788,247 + MMP_RS04150 0.11 -0.3 788,354 - MMP_RS04150 0.20 -0.0 788,354 - MMP_RS04150 0.20 +0.1 788,404 - MMP_RS04150 0.24 -0.3 788,405 + MMP_RS04150 0.24 +0.7 788,468 - MMP_RS04150 0.29 -0.2 788,612 - MMP_RS04150 0.41 +0.0 788,821 - MMP_RS04150 0.58 +0.2 788,825 - MMP_RS04150 0.59 -0.1 788,825 - MMP_RS04150 0.59 +0.2 788,829 - MMP_RS04150 0.59 -0.0 788,830 + MMP_RS04150 0.59 -0.0 788,863 - MMP_RS04150 0.62 +1.2 789,056 - MMP_RS04150 0.78 +0.0 789,057 + MMP_RS04150 0.78 -0.0 789,230 - +0.1 789,311 - -0.2 789,324 - +0.4 789,334 + -0.1 789,339 - -0.2 789,340 + -0.3 789,340 + -0.1 789,340 + +0.2 789,340 + +0.5 789,404 - +0.1 789,404 - +0.2 789,429 + -0.2 789,490 + +0.5 789,496 - -0.5 789,497 + +0.2 789,511 + MMP_RS04155 0.10 -0.2 789,516 - MMP_RS04155 0.11 +0.1 789,517 + MMP_RS04155 0.11 +0.4 789,517 + MMP_RS04155 0.11 +0.0 789,550 - MMP_RS04155 0.14 -0.1 789,551 + MMP_RS04155 0.14 +0.3 789,551 + MMP_RS04155 0.14 -0.2 789,558 + MMP_RS04155 0.14 -0.1 789,566 - MMP_RS04155 0.15 +0.2 789,567 + MMP_RS04155 0.15 +0.7 789,567 + MMP_RS04155 0.15 +0.1 789,631 + MMP_RS04155 0.20 -1.2 789,662 - MMP_RS04155 0.23 +1.3 789,663 + MMP_RS04155 0.23 +0.3 789,663 + MMP_RS04155 0.23 -0.0 789,670 - MMP_RS04155 0.24 +0.1 789,671 + MMP_RS04155 0.24 +0.7 789,747 - MMP_RS04155 0.30 -0.1 789,748 + MMP_RS04155 0.30 +0.5 789,748 + MMP_RS04155 0.30 +0.1 789,754 - MMP_RS04155 0.31 -0.2 789,754 - MMP_RS04155 0.31 +0.1 789,754 - MMP_RS04155 0.31 +0.2 789,755 + MMP_RS04155 0.31 +0.5 789,755 + MMP_RS04155 0.31 +0.1 789,755 + MMP_RS04155 0.31 +0.6 789,757 + MMP_RS04155 0.31 -0.0 789,894 + MMP_RS04155 0.42 +0.1 789,895 - MMP_RS04155 0.42 -0.2 789,896 + MMP_RS04155 0.42 +0.7 789,896 + MMP_RS04155 0.42 +0.3 789,897 - MMP_RS04155 0.42 +0.2 789,897 - MMP_RS04155 0.42 -0.3 789,897 - MMP_RS04155 0.42 +0.2 789,903 + MMP_RS04155 0.43 -0.0 790,123 + MMP_RS04155 0.61 +0.2 790,228 + MMP_RS04155 0.70 -0.2 790,266 - MMP_RS04155 0.73 -0.3 790,270 - MMP_RS04155 0.73 +1.1
Or see this region's nucleotide sequence