Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03625

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03615 and MMP_RS03620 are separated by 5 nucleotidesMMP_RS03620 and MMP_RS03625 are separated by 85 nucleotidesMMP_RS03625 and MMP_RS03630 are separated by 65 nucleotides MMP_RS03615: MMP_RS03615 - 4Fe-4S binding protein, at 678,832 to 679,533 _RS03615 MMP_RS03620: MMP_RS03620 - hypothetical protein, at 679,539 to 680,084 _RS03620 MMP_RS03625: MMP_RS03625 - cell wall-binding protein, at 680,170 to 681,129 _RS03625 MMP_RS03630: MMP_RS03630 - hypothetical protein, at 681,195 to 682,061 _RS03630 Position (kb) 680 681 682Strain fitness (log2 ratio) -1 0 1at 679.174 kb on + strand, within MMP_RS03615at 679.179 kb on - strand, within MMP_RS03615at 679.215 kb on + strand, within MMP_RS03615at 679.252 kb on - strand, within MMP_RS03615at 679.330 kb on - strand, within MMP_RS03615at 679.332 kb on - strand, within MMP_RS03615at 679.384 kb on - strand, within MMP_RS03615at 679.385 kb on + strand, within MMP_RS03615at 679.461 kb on - strand, within MMP_RS03615at 679.484 kb on + strandat 679.668 kb on - strand, within MMP_RS03620at 679.669 kb on + strand, within MMP_RS03620at 679.680 kb on - strand, within MMP_RS03620at 679.702 kb on - strand, within MMP_RS03620at 679.704 kb on - strand, within MMP_RS03620at 679.705 kb on + strand, within MMP_RS03620at 679.748 kb on - strand, within MMP_RS03620at 679.749 kb on + strand, within MMP_RS03620at 679.753 kb on + strand, within MMP_RS03620at 679.811 kb on - strand, within MMP_RS03620at 679.814 kb on + strand, within MMP_RS03620at 679.847 kb on + strand, within MMP_RS03620at 679.902 kb on - strand, within MMP_RS03620at 679.960 kb on - strand, within MMP_RS03620at 680.096 kb on - strandat 680.097 kb on + strandat 680.099 kb on + strandat 680.099 kb on + strandat 680.156 kb on + strandat 680.158 kb on + strandat 680.158 kb on + strandat 680.242 kb on - strandat 680.388 kb on + strand, within MMP_RS03625at 680.393 kb on - strand, within MMP_RS03625at 680.393 kb on - strand, within MMP_RS03625at 680.394 kb on + strand, within MMP_RS03625at 680.414 kb on - strand, within MMP_RS03625at 680.603 kb on - strand, within MMP_RS03625at 680.609 kb on - strand, within MMP_RS03625at 680.624 kb on + strand, within MMP_RS03625at 680.947 kb on - strand, within MMP_RS03625at 681.015 kb on - strand, within MMP_RS03625at 681.015 kb on - strand, within MMP_RS03625at 681.092 kb on + strandat 681.103 kb on - strandat 681.104 kb on + strandat 681.164 kb on - strandat 681.165 kb on + strandat 681.170 kb on - strandat 681.180 kb on - strandat 681.182 kb on - strandat 681.183 kb on + strandat 681.183 kb on + strandat 681.232 kb on - strandat 681.233 kb on + strandat 681.306 kb on - strand, within MMP_RS03630at 681.386 kb on - strand, within MMP_RS03630at 681.430 kb on + strand, within MMP_RS03630at 681.488 kb on - strand, within MMP_RS03630at 681.492 kb on - strand, within MMP_RS03630at 681.492 kb on - strand, within MMP_RS03630at 681.493 kb on + strand, within MMP_RS03630at 681.497 kb on + strand, within MMP_RS03630at 681.497 kb on + strand, within MMP_RS03630at 681.695 kb on - strand, within MMP_RS03630at 681.696 kb on + strand, within MMP_RS03630at 681.726 kb on - strand, within MMP_RS03630at 681.732 kb on - strand, within MMP_RS03630at 681.756 kb on + strand, within MMP_RS03630at 681.756 kb on + strand, within MMP_RS03630at 681.766 kb on - strand, within MMP_RS03630at 681.768 kb on - strand, within MMP_RS03630at 681.768 kb on - strand, within MMP_RS03630at 681.769 kb on + strand, within MMP_RS03630at 681.769 kb on + strand, within MMP_RS03630at 681.799 kb on + strand, within MMP_RS03630at 681.811 kb on - strand, within MMP_RS03630at 681.840 kb on - strand, within MMP_RS03630at 681.841 kb on + strand, within MMP_RS03630at 681.845 kb on - strand, within MMP_RS03630at 681.873 kb on - strand, within MMP_RS03630at 681.918 kb on - strand, within MMP_RS03630at 681.918 kb on - strand, within MMP_RS03630at 681.921 kb on + strand, within MMP_RS03630at 681.928 kb on - strand, within MMP_RS03630at 681.987 kb on - strandat 682.023 kb on - strandat 682.077 kb on - strandat 682.077 kb on - strandat 682.078 kb on + strandat 682.078 kb on + strandat 682.081 kb on - strandat 682.081 kb on - strandat 682.081 kb on - strandat 682.081 kb on - strandat 682.082 kb on + strandat 682.082 kb on + strandat 682.082 kb on + strandat 682.082 kb on + strandat 682.083 kb on - strandat 682.083 kb on - strandat 682.107 kb on - strandat 682.107 kb on - strandat 682.108 kb on + strandat 682.108 kb on + strandat 682.109 kb on - strandat 682.109 kb on - strandat 682.113 kb on - strandat 682.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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679,174 + MMP_RS03615 0.49 -0.1
679,179 - MMP_RS03615 0.49 -0.3
679,215 + MMP_RS03615 0.55 +1.5
679,252 - MMP_RS03615 0.60 +0.4
679,330 - MMP_RS03615 0.71 +0.0
679,332 - MMP_RS03615 0.71 -0.2
679,384 - MMP_RS03615 0.79 -0.0
679,385 + MMP_RS03615 0.79 -0.3
679,461 - MMP_RS03615 0.90 +0.2
679,484 + +0.1
679,668 - MMP_RS03620 0.24 -0.1
679,669 + MMP_RS03620 0.24 -0.3
679,680 - MMP_RS03620 0.26 -0.4
679,702 - MMP_RS03620 0.30 +0.3
679,704 - MMP_RS03620 0.30 +0.2
679,705 + MMP_RS03620 0.30 -0.8
679,748 - MMP_RS03620 0.38 -0.1
679,749 + MMP_RS03620 0.38 -0.7
679,753 + MMP_RS03620 0.39 +0.0
679,811 - MMP_RS03620 0.50 +0.3
679,814 + MMP_RS03620 0.50 -0.0
679,847 + MMP_RS03620 0.56 -0.1
679,902 - MMP_RS03620 0.66 -0.8
679,960 - MMP_RS03620 0.77 +0.2
680,096 - -0.5
680,097 + +0.1
680,099 + +0.2
680,099 + -0.1
680,156 + +0.4
680,158 + -0.1
680,158 + +0.4
680,242 - +0.1
680,388 + MMP_RS03625 0.23 +0.2
680,393 - MMP_RS03625 0.23 +0.3
680,393 - MMP_RS03625 0.23 +0.2
680,394 + MMP_RS03625 0.23 +0.1
680,414 - MMP_RS03625 0.25 -0.3
680,603 - MMP_RS03625 0.45 +0.0
680,609 - MMP_RS03625 0.46 +0.0
680,624 + MMP_RS03625 0.47 +0.1
680,947 - MMP_RS03625 0.81 -0.2
681,015 - MMP_RS03625 0.88 -0.3
681,015 - MMP_RS03625 0.88 +0.3
681,092 + -0.2
681,103 - -0.1
681,104 + -0.1
681,164 - -0.1
681,165 + +0.0
681,170 - -0.2
681,180 - +0.5
681,182 - +0.5
681,183 + -0.3
681,183 + +0.5
681,232 - +0.1
681,233 + -0.3
681,306 - MMP_RS03630 0.13 +0.3
681,386 - MMP_RS03630 0.22 +0.4
681,430 + MMP_RS03630 0.27 +0.2
681,488 - MMP_RS03630 0.34 -0.2
681,492 - MMP_RS03630 0.34 +0.2
681,492 - MMP_RS03630 0.34 +0.2
681,493 + MMP_RS03630 0.34 +0.0
681,497 + MMP_RS03630 0.35 +0.0
681,497 + MMP_RS03630 0.35 +0.3
681,695 - MMP_RS03630 0.58 -0.1
681,696 + MMP_RS03630 0.58 +0.1
681,726 - MMP_RS03630 0.61 -0.4
681,732 - MMP_RS03630 0.62 +0.7
681,756 + MMP_RS03630 0.65 +0.1
681,756 + MMP_RS03630 0.65 +0.3
681,766 - MMP_RS03630 0.66 -0.1
681,768 - MMP_RS03630 0.66 +0.3
681,768 - MMP_RS03630 0.66 -0.1
681,769 + MMP_RS03630 0.66 +0.1
681,769 + MMP_RS03630 0.66 +0.0
681,799 + MMP_RS03630 0.70 +0.1
681,811 - MMP_RS03630 0.71 +0.2
681,840 - MMP_RS03630 0.74 +0.1
681,841 + MMP_RS03630 0.75 -0.2
681,845 - MMP_RS03630 0.75 +0.6
681,873 - MMP_RS03630 0.78 -0.2
681,918 - MMP_RS03630 0.83 -0.3
681,918 - MMP_RS03630 0.83 +0.1
681,921 + MMP_RS03630 0.84 -0.1
681,928 - MMP_RS03630 0.85 +0.0
681,987 - +0.2
682,023 - -0.1
682,077 - +0.2
682,077 - -0.0
682,078 + -0.4
682,078 + +0.3
682,081 - -0.2
682,081 - +0.6
682,081 - -0.3
682,081 - +0.1
682,082 + -0.1
682,082 + +0.3
682,082 + -0.1
682,082 + +0.1
682,083 - -0.2
682,083 - +1.2
682,107 - +0.3
682,107 - +0.5
682,108 + +0.5
682,108 + -0.1
682,109 - +0.4
682,109 - +0.0
682,113 - -0.1
682,114 + -0.0

Or see this region's nucleotide sequence