Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02405

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02400 and MMP_RS02405 are separated by 127 nucleotidesMMP_RS02405 and MMP_RS02410 are separated by 115 nucleotidesMMP_RS02410 and MMP_RS02415 are separated by 103 nucleotides MMP_RS02400: MMP_RS02400 - site-2 protease family protein, at 445,925 to 446,938 _RS02400 MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587 _RS02405 MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449 _RS02410 MMP_RS02415: MMP_RS02415 - site-specific integrase, at 448,553 to 449,101 _RS02415 Position (kb) 447 448Strain fitness (log2 ratio) -1 0 1at 446.096 kb on - strand, within MMP_RS02400at 446.106 kb on + strand, within MMP_RS02400at 446.111 kb on + strand, within MMP_RS02400at 446.129 kb on + strand, within MMP_RS02400at 446.129 kb on + strand, within MMP_RS02400at 446.149 kb on - strand, within MMP_RS02400at 446.259 kb on + strand, within MMP_RS02400at 446.272 kb on - strand, within MMP_RS02400at 446.273 kb on + strand, within MMP_RS02400at 446.273 kb on + strand, within MMP_RS02400at 446.276 kb on + strand, within MMP_RS02400at 446.301 kb on + strand, within MMP_RS02400at 446.305 kb on - strand, within MMP_RS02400at 446.305 kb on - strand, within MMP_RS02400at 446.306 kb on + strand, within MMP_RS02400at 446.306 kb on + strand, within MMP_RS02400at 446.351 kb on + strand, within MMP_RS02400at 446.387 kb on - strand, within MMP_RS02400at 446.403 kb on + strand, within MMP_RS02400at 446.411 kb on - strand, within MMP_RS02400at 446.458 kb on - strand, within MMP_RS02400at 446.459 kb on + strand, within MMP_RS02400at 446.460 kb on - strand, within MMP_RS02400at 446.494 kb on - strand, within MMP_RS02400at 446.494 kb on - strand, within MMP_RS02400at 446.553 kb on + strand, within MMP_RS02400at 446.775 kb on - strand, within MMP_RS02400at 446.776 kb on + strand, within MMP_RS02400at 446.824 kb on + strand, within MMP_RS02400at 446.877 kb on + strandat 446.962 kb on - strandat 446.962 kb on - strandat 446.962 kb on - strandat 446.962 kb on - strandat 446.963 kb on + strandat 446.963 kb on + strandat 446.963 kb on + strandat 446.965 kb on - strandat 446.965 kb on - strandat 446.965 kb on - strandat 446.966 kb on + strandat 446.966 kb on + strandat 446.968 kb on + strandat 446.968 kb on + strandat 446.988 kb on + strandat 447.006 kb on - strandat 447.007 kb on + strandat 447.007 kb on + strandat 447.010 kb on - strandat 447.010 kb on - strandat 447.010 kb on - strandat 447.010 kb on - strandat 447.020 kb on + strandat 447.050 kb on - strandat 447.051 kb on + strandat 447.085 kb on - strandat 447.085 kb on - strandat 447.085 kb on - strandat 447.366 kb on - strand, within MMP_RS02405at 447.366 kb on - strand, within MMP_RS02405at 447.367 kb on + strand, within MMP_RS02405at 447.367 kb on + strand, within MMP_RS02405at 447.369 kb on + strand, within MMP_RS02405at 447.415 kb on + strand, within MMP_RS02405at 447.472 kb on - strand, within MMP_RS02405at 447.601 kb on - strandat 447.601 kb on - strandat 447.642 kb on + strandat 447.738 kb on + strandat 447.837 kb on - strand, within MMP_RS02410at 448.088 kb on + strand, within MMP_RS02410at 448.362 kb on - strand, within MMP_RS02410at 448.392 kb on - strandat 448.483 kb on - strandat 448.483 kb on - strandat 448.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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446,096 - MMP_RS02400 0.17 -0.8
446,106 + MMP_RS02400 0.18 -0.1
446,111 + MMP_RS02400 0.18 -0.1
446,129 + MMP_RS02400 0.20 +0.3
446,129 + MMP_RS02400 0.20 -0.2
446,149 - MMP_RS02400 0.22 -0.3
446,259 + MMP_RS02400 0.33 -0.5
446,272 - MMP_RS02400 0.34 +0.0
446,273 + MMP_RS02400 0.34 +0.1
446,273 + MMP_RS02400 0.34 +0.4
446,276 + MMP_RS02400 0.35 -0.0
446,301 + MMP_RS02400 0.37 +0.0
446,305 - MMP_RS02400 0.37 -0.4
446,305 - MMP_RS02400 0.37 -0.1
446,306 + MMP_RS02400 0.38 -0.1
446,306 + MMP_RS02400 0.38 +0.3
446,351 + MMP_RS02400 0.42 -0.3
446,387 - MMP_RS02400 0.46 -0.2
446,403 + MMP_RS02400 0.47 -0.0
446,411 - MMP_RS02400 0.48 +0.2
446,458 - MMP_RS02400 0.53 -0.3
446,459 + MMP_RS02400 0.53 +0.7
446,460 - MMP_RS02400 0.53 -0.0
446,494 - MMP_RS02400 0.56 +0.1
446,494 - MMP_RS02400 0.56 +0.4
446,553 + MMP_RS02400 0.62 +0.4
446,775 - MMP_RS02400 0.84 +0.0
446,776 + MMP_RS02400 0.84 +0.4
446,824 + MMP_RS02400 0.89 -0.5
446,877 + -0.2
446,962 - -0.1
446,962 - -0.0
446,962 - +0.3
446,962 - +0.5
446,963 + -0.2
446,963 + -0.1
446,963 + -0.1
446,965 - -0.4
446,965 - +0.2
446,965 - -0.1
446,966 + +1.1
446,966 + +0.3
446,968 + -0.5
446,968 + +0.1
446,988 + -0.5
447,006 - -0.0
447,007 + +0.5
447,007 + +0.6
447,010 - +0.0
447,010 - -0.1
447,010 - -0.2
447,010 - +0.2
447,020 + -0.0
447,050 - -0.2
447,051 + -0.7
447,085 - +0.4
447,085 - -0.2
447,085 - -0.1
447,366 - MMP_RS02405 0.57 +0.5
447,366 - MMP_RS02405 0.57 -0.0
447,367 + MMP_RS02405 0.58 -0.0
447,367 + MMP_RS02405 0.58 +0.0
447,369 + MMP_RS02405 0.58 -1.1
447,415 + MMP_RS02405 0.67 -0.2
447,472 - MMP_RS02405 0.78 -0.2
447,601 - +0.2
447,601 - +0.1
447,642 + -0.4
447,738 + -0.2
447,837 - MMP_RS02410 0.18 +0.3
448,088 + MMP_RS02410 0.52 +0.3
448,362 - MMP_RS02410 0.88 -0.4
448,392 - +0.2
448,483 - +0.1
448,483 - -0.3
448,483 - +0.0

Or see this region's nucleotide sequence