Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21150 and IAI47_21155 are separated by 757 nucleotides IAI47_21155 and IAI47_21160 are separated by 186 nucleotides
IAI47_21150: IAI47_21150 - pyrroloquinoline quinone-dependent dehydrogenase, at 479,021 to 481,117
_21150
IAI47_21155: IAI47_21155 - IS6 family transposase, at 481,875 to 482,569
_21155
IAI47_21160: IAI47_21160 - hydroxyacid dehydrogenase, at 482,756 to 483,337
_21160
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 480.941 kb on + strand at 480.942 kb on - strand at 480.942 kb on - strand at 480.942 kb on - strand at 480.966 kb on + strand at 480.967 kb on - strand at 480.967 kb on - strand at 480.996 kb on + strand at 480.996 kb on + strand at 481.013 kb on + strand at 481.014 kb on - strand at 481.019 kb on + strand at 481.019 kb on + strand at 481.019 kb on + strand at 481.019 kb on + strand at 481.019 kb on + strand at 481.020 kb on - strand at 481.034 kb on + strand at 481.034 kb on + strand at 481.035 kb on - strand at 481.035 kb on - strand at 481.057 kb on + strand at 481.057 kb on + strand at 481.057 kb on + strand at 481.058 kb on - strand at 481.058 kb on - strand at 481.060 kb on + strand at 481.060 kb on + strand at 481.060 kb on + strand at 481.061 kb on - strand at 481.061 kb on - strand at 481.061 kb on - strand at 481.100 kb on + strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.101 kb on - strand at 481.115 kb on + strand at 481.136 kb on + strand at 481.140 kb on + strand at 481.140 kb on + strand at 481.140 kb on + strand at 481.140 kb on + strand at 481.140 kb on + strand at 481.140 kb on + strand at 481.141 kb on - strand at 481.141 kb on - strand at 481.141 kb on - strand at 481.208 kb on + strand at 481.208 kb on + strand at 481.209 kb on - strand at 481.209 kb on - strand at 481.209 kb on - strand at 481.286 kb on - strand at 481.307 kb on + strand at 481.307 kb on + strand at 481.307 kb on + strand at 481.347 kb on + strand at 481.359 kb on + strand at 481.408 kb on + strand at 481.408 kb on + strand at 481.408 kb on + strand at 481.409 kb on - strand at 481.409 kb on - strand at 481.439 kb on + strand at 481.439 kb on + strand at 481.439 kb on + strand at 481.439 kb on + strand at 481.439 kb on + strand at 481.440 kb on - strand at 481.440 kb on - strand at 481.440 kb on - strand at 481.460 kb on + strand at 481.460 kb on + strand at 481.460 kb on + strand at 481.460 kb on + strand at 481.461 kb on - strand at 481.461 kb on - strand at 481.498 kb on + strand at 481.498 kb on + strand at 481.549 kb on + strand at 481.603 kb on + strand at 481.603 kb on + strand at 481.603 kb on + strand at 481.603 kb on + strand at 481.603 kb on + strand at 481.604 kb on - strand at 481.604 kb on - strand at 481.604 kb on - strand at 481.619 kb on + strand at 481.619 kb on + strand at 481.619 kb on + strand at 481.619 kb on + strand at 481.620 kb on - strand at 481.638 kb on + strand at 481.639 kb on - strand at 481.639 kb on - strand at 481.676 kb on + strand at 481.676 kb on + strand at 481.676 kb on + strand at 481.677 kb on - strand at 481.680 kb on + strand at 481.680 kb on + strand at 481.681 kb on - strand at 481.681 kb on - strand at 481.773 kb on + strand at 481.773 kb on + strand at 481.773 kb on + strand at 481.773 kb on + strand at 481.774 kb on - strand at 481.803 kb on - strand at 481.842 kb on - strand at 481.842 kb on - strand at 481.842 kb on - strand at 481.842 kb on - strand at 481.950 kb on + strand, within IAI47_21155 at 481.962 kb on + strand, within IAI47_21155 at 482.038 kb on + strand, within IAI47_21155 at 482.078 kb on - strand, within IAI47_21155 at 482.078 kb on - strand, within IAI47_21155 at 482.078 kb on - strand, within IAI47_21155 at 482.318 kb on + strand, within IAI47_21155 at 482.363 kb on - strand, within IAI47_21155 at 482.363 kb on - strand, within IAI47_21155 at 482.569 kb on + strand at 482.601 kb on + strand at 482.602 kb on - strand at 482.639 kb on - strand at 482.721 kb on + strand at 482.722 kb on - strand at 482.722 kb on - strand at 482.722 kb on - strand at 482.751 kb on + strand at 482.786 kb on + strand at 482.787 kb on - strand at 482.791 kb on + strand at 482.791 kb on + strand at 482.791 kb on + strand at 482.791 kb on + strand at 482.791 kb on + strand at 482.791 kb on + strand at 482.791 kb on + strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.792 kb on - strand at 482.801 kb on + strand at 482.801 kb on + strand at 482.802 kb on - strand at 482.802 kb on - strand at 482.802 kb on - strand at 482.802 kb on - strand at 482.802 kb on - strand at 482.808 kb on + strand at 482.808 kb on + strand at 482.809 kb on - strand at 482.883 kb on + strand, within IAI47_21160 at 482.884 kb on - strand, within IAI47_21160 at 482.884 kb on - strand, within IAI47_21160 at 483.010 kb on + strand, within IAI47_21160 at 483.010 kb on + strand, within IAI47_21160 at 483.010 kb on + strand, within IAI47_21160 at 483.010 kb on + strand, within IAI47_21160 at 483.011 kb on - strand, within IAI47_21160 at 483.081 kb on + strand, within IAI47_21160 at 483.082 kb on - strand, within IAI47_21160 at 483.082 kb on - strand, within IAI47_21160 at 483.082 kb on - strand, within IAI47_21160 at 483.082 kb on - strand, within IAI47_21160 at 483.082 kb on - strand, within IAI47_21160 at 483.082 kb on - strand, within IAI47_21160 at 483.130 kb on + strand, within IAI47_21160 at 483.130 kb on + strand, within IAI47_21160 at 483.130 kb on + strand, within IAI47_21160 at 483.130 kb on + strand, within IAI47_21160 at 483.130 kb on + strand, within IAI47_21160 at 483.130 kb on + strand, within IAI47_21160 at 483.131 kb on - strand, within IAI47_21160 at 483.131 kb on - strand, within IAI47_21160 at 483.131 kb on - strand, within IAI47_21160 at 483.131 kb on - strand, within IAI47_21160 at 483.131 kb on - strand, within IAI47_21160 at 483.148 kb on + strand, within IAI47_21160 at 483.148 kb on + strand, within IAI47_21160 at 483.149 kb on - strand, within IAI47_21160 at 483.149 kb on - strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.158 kb on + strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.159 kb on - strand, within IAI47_21160 at 483.192 kb on + strand, within IAI47_21160 at 483.192 kb on + strand, within IAI47_21160 at 483.322 kb on + strand at 483.322 kb on + strand at 483.322 kb on + strand at 483.322 kb on + strand at 483.323 kb on - strand at 483.323 kb on - strand at 483.431 kb on + strand at 483.432 kb on - strand at 483.434 kb on + strand at 483.434 kb on + strand at 483.435 kb on - strand at 483.435 kb on - strand at 483.435 kb on - strand at 483.435 kb on - strand at 483.435 kb on - strand at 483.435 kb on - strand at 483.461 kb on + strand at 483.461 kb on + strand at 483.462 kb on - strand at 483.500 kb on - strand at 483.500 kb on - strand at 483.527 kb on - strand at 483.565 kb on + strand at 483.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 480,941 + +2.1 480,942 - -2.2 480,942 - +0.7 480,942 - +2.6 480,966 + +0.7 480,967 - +0.4 480,967 - -0.6 480,996 + -1.4 480,996 + +0.6 481,013 + -2.0 481,014 - +0.6 481,019 + +1.1 481,019 + -1.1 481,019 + -1.2 481,019 + +1.4 481,019 + -2.0 481,020 - -2.3 481,034 + +1.7 481,034 + +0.9 481,035 - -2.6 481,035 - -0.2 481,057 + -1.2 481,057 + -0.8 481,057 + +0.4 481,058 - -0.9 481,058 - +0.9 481,060 + -1.7 481,060 + -0.1 481,060 + -0.6 481,061 - +0.8 481,061 - -1.2 481,061 - -2.8 481,100 + -1.0 481,101 - +0.8 481,101 - -0.2 481,101 - +1.1 481,115 + -1.6 481,136 + -1.7 481,140 + +0.4 481,140 + +1.2 481,140 + -2.3 481,140 + +0.7 481,140 + +0.1 481,140 + -0.9 481,141 - +0.2 481,141 - +1.7 481,141 - -2.4 481,208 + -0.6 481,208 + +1.4 481,209 - -2.3 481,209 - +2.6 481,209 - -1.4 481,286 - +0.6 481,307 + +0.2 481,307 + +2.0 481,307 + +1.1 481,347 + +3.1 481,359 + +0.1 481,408 + +1.0 481,408 + +1.2 481,408 + -2.5 481,409 - -0.2 481,409 - +0.4 481,439 + -1.4 481,439 + -3.0 481,439 + +3.1 481,439 + +0.4 481,439 + +2.5 481,440 - -0.2 481,440 - -0.6 481,440 - +0.8 481,460 + -0.6 481,460 + -1.4 481,460 + +3.0 481,460 + +1.4 481,461 - +1.0 481,461 - -0.2 481,498 + -2.4 481,498 + -0.2 481,549 + -0.2 481,603 + +0.4 481,603 + +2.4 481,603 + -0.0 481,603 + -0.1 481,603 + -1.9 481,604 - -0.7 481,604 - +0.4 481,604 - +0.4 481,619 + -0.3 481,619 + -2.5 481,619 + -0.3 481,619 + -0.0 481,620 - +1.2 481,638 + +0.2 481,639 - -0.9 481,639 - -0.3 481,676 + -1.2 481,676 + +1.4 481,676 + -0.6 481,677 - +1.9 481,680 + -0.1 481,680 + +3.4 481,681 - +0.3 481,681 - -0.6 481,773 + -1.4 481,773 + +0.1 481,773 + -1.6 481,773 + -2.3 481,774 - +1.4 481,803 - +0.4 481,842 - +2.6 481,842 - +0.9 481,842 - +1.6 481,842 - +2.4 481,950 + IAI47_21155 0.11 -0.3 481,962 + IAI47_21155 0.13 +3.4 482,038 + IAI47_21155 0.23 +2.4 482,078 - IAI47_21155 0.29 -1.0 482,078 - IAI47_21155 0.29 +1.7 482,078 - IAI47_21155 0.29 +0.2 482,318 + IAI47_21155 0.64 -0.9 482,363 - IAI47_21155 0.70 +2.5 482,363 - IAI47_21155 0.70 -0.2 482,569 + +0.8 482,601 + +0.6 482,602 - +1.9 482,639 - +1.4 482,721 + -0.6 482,722 - -1.2 482,722 - -2.0 482,722 - +0.6 482,751 + -1.6 482,786 + -0.0 482,787 - +1.4 482,791 + -0.0 482,791 + -0.6 482,791 + +0.3 482,791 + -0.7 482,791 + +1.4 482,791 + -0.4 482,791 + +2.8 482,792 - +1.0 482,792 - -0.4 482,792 - +0.0 482,792 - +0.7 482,792 - +1.4 482,792 - +1.2 482,792 - +0.4 482,792 - -0.7 482,801 + -2.1 482,801 + -2.5 482,802 - +2.1 482,802 - -2.0 482,802 - -2.3 482,802 - +0.4 482,802 - -0.2 482,808 + -1.4 482,808 + +0.6 482,809 - -0.7 482,883 + IAI47_21160 0.22 -0.6 482,884 - IAI47_21160 0.22 -1.6 482,884 - IAI47_21160 0.22 -0.7 483,010 + IAI47_21160 0.44 -0.7 483,010 + IAI47_21160 0.44 -1.4 483,010 + IAI47_21160 0.44 +1.1 483,010 + IAI47_21160 0.44 +0.4 483,011 - IAI47_21160 0.44 -0.2 483,081 + IAI47_21160 0.56 -0.3 483,082 - IAI47_21160 0.56 +1.9 483,082 - IAI47_21160 0.56 +0.3 483,082 - IAI47_21160 0.56 -1.6 483,082 - IAI47_21160 0.56 -0.4 483,082 - IAI47_21160 0.56 -0.6 483,082 - IAI47_21160 0.56 -0.5 483,130 + IAI47_21160 0.64 +0.6 483,130 + IAI47_21160 0.64 +1.1 483,130 + IAI47_21160 0.64 +0.0 483,130 + IAI47_21160 0.64 -1.0 483,130 + IAI47_21160 0.64 +0.5 483,130 + IAI47_21160 0.64 -0.4 483,131 - IAI47_21160 0.64 -1.2 483,131 - IAI47_21160 0.64 -0.9 483,131 - IAI47_21160 0.64 +0.2 483,131 - IAI47_21160 0.64 -1.3 483,131 - IAI47_21160 0.64 -1.3 483,148 + IAI47_21160 0.67 -0.3 483,148 + IAI47_21160 0.67 +0.8 483,149 - IAI47_21160 0.68 +0.3 483,149 - IAI47_21160 0.68 -0.2 483,158 + IAI47_21160 0.69 +1.5 483,158 + IAI47_21160 0.69 -0.9 483,158 + IAI47_21160 0.69 +0.4 483,158 + IAI47_21160 0.69 -1.7 483,158 + IAI47_21160 0.69 +1.2 483,158 + IAI47_21160 0.69 +0.6 483,158 + IAI47_21160 0.69 +0.4 483,158 + IAI47_21160 0.69 -0.5 483,159 - IAI47_21160 0.69 -2.0 483,159 - IAI47_21160 0.69 +1.1 483,159 - IAI47_21160 0.69 -0.2 483,159 - IAI47_21160 0.69 +1.3 483,159 - IAI47_21160 0.69 -0.2 483,159 - IAI47_21160 0.69 +0.3 483,159 - IAI47_21160 0.69 +2.0 483,159 - IAI47_21160 0.69 +0.3 483,159 - IAI47_21160 0.69 +1.1 483,159 - IAI47_21160 0.69 -2.0 483,159 - IAI47_21160 0.69 -0.6 483,159 - IAI47_21160 0.69 +1.6 483,159 - IAI47_21160 0.69 +1.4 483,159 - IAI47_21160 0.69 +0.3 483,159 - IAI47_21160 0.69 +0.8 483,192 + IAI47_21160 0.75 +0.2 483,192 + IAI47_21160 0.75 +1.0 483,322 + -0.4 483,322 + -0.9 483,322 + +1.0 483,322 + +0.4 483,323 - -1.3 483,323 - -2.2 483,431 + +1.9 483,432 - +0.8 483,434 + +0.1 483,434 + -1.7 483,435 - -1.0 483,435 - +0.0 483,435 - -0.6 483,435 - -0.2 483,435 - +0.1 483,435 - -1.7 483,461 + -0.6 483,461 + -0.2 483,462 - +0.2 483,500 - -2.4 483,500 - +0.4 483,527 - +0.2 483,565 + -2.1 483,566 - -0.9
Or see this region's nucleotide sequence