Strain Fitness in Pantoea sp. MT58 around IAI47_10725

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,267,512	+		IAI47_10715	0.26	+1.0
2,267,517	+		IAI47_10715	0.27	+1.9
2,267,517	+		IAI47_10715	0.27	+0.5
2,267,517	+		IAI47_10715	0.27	-0.6
2,267,518	-		IAI47_10715	0.28	-2.5
2,267,518	-		IAI47_10715	0.28	-0.5
2,267,518	-		IAI47_10715	0.28	+0.5
2,267,522	+		IAI47_10715	0.28	+3.7
2,267,523	-		IAI47_10715	0.29	-2.0
2,267,523	-		IAI47_10715	0.29	-2.0
2,267,523	-		IAI47_10715	0.29	+0.5
2,267,523	-		IAI47_10715	0.29	-1.0
2,267,597	+		IAI47_10715	0.44	-2.0
2,267,598	-		IAI47_10715	0.45	-0.3
2,267,613	+		IAI47_10715	0.48	-0.2
2,267,613	+		IAI47_10715	0.48	-0.6
2,267,614	-		IAI47_10715	0.48	+0.9
2,267,614	-		IAI47_10715	0.48	-2.7
2,267,616	+		IAI47_10715	0.49	-1.7
2,267,616	+		IAI47_10715	0.49	+0.8
2,267,616	+		IAI47_10715	0.49	+0.5
2,267,616	+		IAI47_10715	0.49	+0.9
2,267,616	+		IAI47_10715	0.49	+1.1
2,267,616	+		IAI47_10715	0.49	+0.5
2,267,616	+		IAI47_10715	0.49	+1.5
2,267,616	+		IAI47_10715	0.49	-0.6
2,267,617	-		IAI47_10715	0.49	+0.4
2,267,617	-		IAI47_10715	0.49	-1.9
2,267,641	-		IAI47_10715	0.54	+1.5
2,267,641	-		IAI47_10715	0.54	-0.2
2,267,641	-		IAI47_10715	0.54	-1.6
2,267,641	-		IAI47_10715	0.54	+0.4
2,267,739	+		IAI47_10715	0.75	+0.1
2,267,899	-				-1.0
2,267,927	-				+0.6
2,268,017	+		IAI47_10720	0.27	-0.6
2,268,064	+		IAI47_10720	0.38	+1.4
2,268,108	-		IAI47_10720	0.48	+0.1
2,268,108	-		IAI47_10720	0.48	+0.0
2,268,109	+		IAI47_10720	0.48	-0.7
2,268,109	+		IAI47_10720	0.48	-1.0
2,268,109	+		IAI47_10720	0.48	+1.4
2,268,109	+		IAI47_10720	0.48	-0.8
2,268,109	+		IAI47_10720	0.48	-0.1
2,268,109	+		IAI47_10720	0.48	+1.0
2,268,109	+		IAI47_10720	0.48	-1.0
2,268,110	-		IAI47_10720	0.49	+1.5
2,268,110	-		IAI47_10720	0.49	-1.1
2,268,110	-		IAI47_10720	0.49	-1.1
2,268,110	-		IAI47_10720	0.49	-0.1
2,268,110	-		IAI47_10720	0.49	+1.4
2,268,110	-		IAI47_10720	0.49	-0.1
2,268,110	-		IAI47_10720	0.49	-0.2
2,268,110	-		IAI47_10720	0.49	+1.6
2,268,110	-		IAI47_10720	0.49	+0.5
2,268,180	-		IAI47_10720	0.65	+0.4
2,268,217	+		IAI47_10720	0.73	+1.1
2,268,217	+		IAI47_10720	0.73	-0.5
2,268,217	+		IAI47_10720	0.73	+0.2
2,268,217	+		IAI47_10720	0.73	+1.1
2,268,217	+		IAI47_10720	0.73	-0.4
2,268,217	+		IAI47_10720	0.73	-0.1
2,268,218	-		IAI47_10720	0.73	+0.6
2,268,218	-		IAI47_10720	0.73	-1.5
2,268,218	-		IAI47_10720	0.73	-0.2
2,268,218	-		IAI47_10720	0.73	+1.4
2,268,218	-		IAI47_10720	0.73	-0.2
2,268,308	+				+1.2
2,268,346	-				-1.2
2,268,348	-				+3.0
2,268,360	-				-0.9
2,268,363	+				-1.8
2,268,363	+				-0.5
2,268,378	+				-0.1
2,268,379	-				-2.0
2,268,379	-				-0.5
2,268,383	+				+2.0
2,268,383	+				-1.6
2,268,384	-				+2.4
2,268,384	-				-0.2
2,268,396	+				+1.1
2,268,397	-				+1.4
2,268,408	+				-0.2
2,268,408	+				-0.6
2,268,408	+				-1.2
2,268,409	-				-0.6
2,268,409	-				-0.6
2,268,409	-				+1.0
2,268,409	-				-0.7
2,268,433	-				-1.0
2,268,479	+				-2.2
2,268,479	+				+0.4
2,268,480	-				+0.1
2,268,480	-				+0.8
2,268,480	-				-2.0
2,268,480	-				-1.0
2,268,480	-				-0.0
2,268,630	-		IAI47_10725	0.61	-2.1
2,268,640	+		IAI47_10725	0.65	-0.4
2,268,641	-		IAI47_10725	0.66	-1.0
2,268,641	-		IAI47_10725	0.66	-1.0
2,268,720	-				+1.5
2,268,726	+				-1.5
2,268,783	-				-2.3
2,268,808	+				-1.2
2,268,808	+				+0.6
2,268,809	+				+1.6
2,268,809	-				-0.2
2,268,809	-				-0.0
2,268,809	-				+0.8
2,268,809	-				-1.2
2,268,811	+				+0.5
2,268,811	+				+2.2
2,268,811	+				-2.6
2,268,811	+				-0.5
2,268,811	+				-0.3
2,268,811	+				+1.4
2,268,812	-				-1.2
2,268,812	-				-0.9
2,268,812	-				-1.0
2,268,812	-				+0.9
2,268,812	-				-0.6
2,268,812	-				-0.3
2,268,812	-				-1.8
2,268,812	-				-0.9
2,268,864	+		IAI47_10730	0.16	-0.8
2,268,865	-		IAI47_10730	0.16	-1.0
2,268,865	-		IAI47_10730	0.16	-0.3
2,269,103	+		IAI47_10730	0.44	+0.2
2,269,104	-		IAI47_10730	0.44	-1.2
2,269,104	-		IAI47_10730	0.44	+2.4
2,269,131	+		IAI47_10730	0.47	-1.6
2,269,132	-		IAI47_10730	0.47	-0.4
2,269,132	-		IAI47_10730	0.47	-2.5
2,269,215	+		IAI47_10730	0.57	-0.2
2,269,215	+		IAI47_10730	0.57	+0.4
2,269,215	+		IAI47_10730	0.57	-1.0
2,269,216	-		IAI47_10730	0.57	-1.0
2,269,240	+		IAI47_10730	0.60	+0.5
2,269,240	+		IAI47_10730	0.60	-1.1
2,269,240	+		IAI47_10730	0.60	+0.4
2,269,240	+		IAI47_10730	0.60	+1.4
2,269,240	+		IAI47_10730	0.60	-1.7
2,269,240	+		IAI47_10730	0.60	+2.4
2,269,240	+		IAI47_10730	0.60	+0.7
2,269,241	-		IAI47_10730	0.60	-1.8
2,269,241	-		IAI47_10730	0.60	-2.1
2,269,241	-		IAI47_10730	0.60	-2.3
2,269,241	-		IAI47_10730	0.60	-0.2
2,269,241	-		IAI47_10730	0.60	+0.4
2,269,241	-		IAI47_10730	0.60	+2.7
2,269,288	+		IAI47_10730	0.65	-0.4
2,269,288	+		IAI47_10730	0.65	+0.8
2,269,288	+		IAI47_10730	0.65	-1.6
2,269,289	-		IAI47_10730	0.66	-0.2
2,269,291	+		IAI47_10730	0.66	+0.2
2,269,291	+		IAI47_10730	0.66	+0.4
2,269,291	+		IAI47_10730	0.66	-0.1
2,269,291	+		IAI47_10730	0.66	-0.3
2,269,291	+		IAI47_10730	0.66	-1.7
2,269,291	+		IAI47_10730	0.66	+1.5
2,269,292	-		IAI47_10730	0.66	-2.4
2,269,292	-		IAI47_10730	0.66	-0.2
2,269,292	-		IAI47_10730	0.66	+0.9
2,269,292	-		IAI47_10730	0.66	+1.8
2,269,329	+		IAI47_10730	0.70	+0.8
2,269,329	+				+1.4
2,269,330	-		IAI47_10730	0.70	-1.2
2,269,330	-		IAI47_10730	0.70	+0.7
2,269,363	+		IAI47_10730	0.74	+0.4
2,269,363	+		IAI47_10730	0.74	+0.1
2,269,363	+		IAI47_10730	0.74	+2.7
2,269,363	+		IAI47_10730	0.74	+0.6
2,269,371	+		IAI47_10730	0.75	+0.7
2,269,371	+		IAI47_10730	0.75	-0.2
2,269,371	+		IAI47_10730	0.75	-0.2
2,269,371	+		IAI47_10730	0.75	-1.2
2,269,371	+		IAI47_10730	0.75	-3.1
2,269,371	+		IAI47_10730	0.75	+0.1
2,269,372	-		IAI47_10730	0.75	+1.2
2,269,372	-		IAI47_10730	0.75	-0.1
2,269,372	-		IAI47_10730	0.75	+0.2
2,269,372	-		IAI47_10730	0.75	-1.1
2,269,372	-		IAI47_10730	0.75	+1.4
2,269,372	-		IAI47_10730	0.75	-0.6
2,269,394	+		IAI47_10730	0.78	+0.7
2,269,394	+		IAI47_10730	0.78	+0.5
2,269,395	-		IAI47_10730	0.78	-2.6
2,269,395	-		IAI47_10730	0.78	-0.2
2,269,395	-		IAI47_10730	0.78	-0.2
2,269,417	+		IAI47_10730	0.80	-0.4
2,269,417	+		IAI47_10730	0.80	+1.4
2,269,417	+		IAI47_10730	0.80	+0.5
2,269,417	+		IAI47_10730	0.80	-0.3
2,269,418	-		IAI47_10730	0.81	+3.4
2,269,418	-		IAI47_10730	0.81	-0.5
2,269,418	-		IAI47_10730	0.81	+1.1
2,269,418	-		IAI47_10730	0.81	+0.5
2,269,418	-		IAI47_10730	0.81	-0.5
2,269,623	-				+0.4
2,269,654	+				-0.8
2,269,654	+				-0.0
2,269,654	+				+1.4
2,269,655	-				-0.1
2,269,659	-				+0.8
2,269,695	+				+0.1