Strain Fitness in Pantoea sp. MT58 around IAI47_05215

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,102,290	+				+2.0
1,102,303	+				-0.8
1,102,321	+				+1.6
1,102,322	-				+0.2
1,102,343	-				-0.1
1,102,366	+				+0.7
1,102,366	+				+0.0
1,102,385	+				+1.5
1,102,386	-				-1.3
1,102,403	+				+1.1
1,102,403	+				+0.9
1,102,403	+				+0.1
1,102,404	-				+1.4
1,102,408	-				+0.2
1,102,408	-				+0.9
1,102,414	+				+1.2
1,102,414	+				-0.2
1,102,441	-				-0.1
1,102,469	+				-2.0
1,102,520	+				+0.7
1,102,521	-				-2.6
1,102,521	-				+0.9
1,102,525	-				+0.2
1,102,549	+				-3.0
1,102,549	+				+0.5
1,102,564	+				+0.1
1,102,565	-				-2.2
1,102,580	+				-1.2
1,102,580	+				-0.2
1,102,580	+				-0.8
1,102,580	+				+0.1
1,102,582	+				-0.4
1,102,582	+				-1.9
1,102,582	+				+0.0
1,102,582	+				+1.5
1,102,582	+				+0.7
1,102,582	+				+1.6
1,102,582	+				-1.4
1,102,582	+				+1.4
1,102,582	+				+1.7
1,102,582	+				+0.2
1,102,583	-				+2.0
1,102,583	-				-0.2
1,102,583	-				+0.9
1,102,583	-				-0.0
1,102,583	-				-1.3
1,102,583	-				-1.8
1,102,621	+				+0.5
1,102,621	+				+1.1
1,102,621	+				-0.6
1,102,621	+				-2.2
1,102,621	+				-0.1
1,102,621	+				-0.3
1,102,622	-				+2.5
1,102,622	-				-1.9
1,102,622	-				-3.4
1,102,622	-				-1.0
1,102,622	-				-0.8
1,102,622	-				-1.3
1,102,622	-				-0.1
1,102,622	-				+1.1
1,102,622	-				-1.0
1,102,624	+				-1.5
1,102,624	+				+0.2
1,102,625	-				-1.5
1,102,625	-				+0.7
1,102,625	-				+0.1
1,102,625	-				+0.9
1,102,625	-				+1.9
1,102,678	+				-1.1
1,102,721	-		IAI47_05210	0.13	+1.8
1,102,724	+		IAI47_05210	0.13	-3.0
1,102,725	-		IAI47_05210	0.14	+0.3
1,102,817	+		IAI47_05210	0.29	+2.1
1,102,880	-		IAI47_05210	0.39	+0.4
1,102,929	+		IAI47_05210	0.47	-0.3
1,102,929	+		IAI47_05210	0.47	-0.8
1,102,930	-		IAI47_05210	0.47	+0.4
1,102,949	+		IAI47_05210	0.50	-2.4
1,102,949	+		IAI47_05210	0.50	+0.6
1,102,950	-		IAI47_05210	0.51	-0.0
1,102,950	-		IAI47_05210	0.51	+0.9
1,102,950	-		IAI47_05210	0.51	+0.7
1,102,950	-		IAI47_05210	0.51	+1.8
1,102,950	-		IAI47_05210	0.51	-0.8
1,102,952	-		IAI47_05210	0.51	+0.6
1,103,051	+		IAI47_05210	0.67	-1.3
1,103,051	+		IAI47_05210	0.67	-2.2
1,103,052	-		IAI47_05210	0.67	+1.8
1,103,052	-		IAI47_05210	0.67	+1.1
1,103,084	-		IAI47_05210	0.73	+2.2
1,103,084	-		IAI47_05210	0.73	-0.3
1,103,084	-		IAI47_05210	0.73	+4.0
1,103,167	+		IAI47_05210	0.86	+1.9
1,103,167	+		IAI47_05210	0.86	+0.8
1,103,168	-		IAI47_05210	0.87	-2.7
1,103,168	-		IAI47_05210	0.87	-1.0
1,103,168	-		IAI47_05210	0.87	+1.2
1,103,178	+		IAI47_05210	0.88	+0.1
1,103,179	-		IAI47_05210	0.88	+0.0
1,103,179	-		IAI47_05210	0.88	-0.0
1,103,206	-				-1.0
1,103,228	+				+0.7
1,103,246	+				-1.3
1,103,247	-				+2.3
1,103,247	-				-1.7
1,103,247	-				+1.3
1,103,254	-				+4.1
1,103,254	-				+0.5
1,103,258	-				-0.4
1,103,258	-				-1.3
1,103,258	-				-0.2
1,103,262	-				+1.1
1,103,262	-				-2.3
1,103,276	+				+1.2
1,103,324	-				-2.7
1,103,324	-				+1.7
1,103,340	+		IAI47_05215	0.10	-1.4
1,103,355	+		IAI47_05215	0.12	-1.1
1,103,357	+		IAI47_05215	0.13	-2.2
1,103,357	+		IAI47_05215	0.13	+1.6
1,103,357	+		IAI47_05215	0.13	-0.5
1,103,358	-		IAI47_05215	0.13	-0.5
1,103,362	+		IAI47_05215	0.14	-0.7
1,103,387	-		IAI47_05215	0.18	-0.8
1,103,387	-		IAI47_05215	0.18	-3.3
1,103,416	+		IAI47_05215	0.22	-0.7
1,103,435	+		IAI47_05215	0.26	+0.7
1,103,445	+		IAI47_05215	0.27	-0.6
1,103,445	+		IAI47_05215	0.27	+0.8
1,103,446	-		IAI47_05215	0.27	+0.5
1,103,450	+		IAI47_05215	0.28	-0.5
1,103,450	+		IAI47_05215	0.28	-0.5
1,103,450	+		IAI47_05215	0.28	-1.6
1,103,450	+		IAI47_05215	0.28	+0.5
1,103,450	+		IAI47_05215	0.28	+2.6
1,103,451	-		IAI47_05215	0.28	-3.6
1,103,471	-		IAI47_05215	0.32	-0.0
1,103,501	-		IAI47_05215	0.36	+0.7
1,103,524	+		IAI47_05215	0.40	-0.0
1,103,569	-		IAI47_05215	0.48	-1.2
1,103,588	+		IAI47_05215	0.51	-1.9
1,103,588	+		IAI47_05215	0.51	-2.2
1,103,588	+		IAI47_05215	0.51	+1.3
1,103,589	-		IAI47_05215	0.51	+0.2
1,103,589	-		IAI47_05215	0.51	-0.5
1,103,589	-		IAI47_05215	0.51	+0.8
1,103,591	+		IAI47_05215	0.51	-1.5
1,103,591	+		IAI47_05215	0.51	+1.8
1,103,591	+		IAI47_05215	0.51	-1.0
1,103,592	-		IAI47_05215	0.51	-0.2
1,103,592	-		IAI47_05215	0.51	+0.2
1,103,668	+		IAI47_05215	0.64	+0.9
1,103,668	+		IAI47_05215	0.64	-0.8
1,103,668	+		IAI47_05215	0.64	+0.4
1,103,669	-		IAI47_05215	0.64	+0.8
1,103,690	+		IAI47_05215	0.67	+1.1
1,103,755	+		IAI47_05215	0.78	-0.8
1,103,755	+		IAI47_05215	0.78	-0.3
1,103,755	+		IAI47_05215	0.78	+1.5
1,103,755	+		IAI47_05215	0.78	-0.5
1,103,755	+		IAI47_05215	0.78	+0.2
1,103,755	+		IAI47_05215	0.78	+1.4
1,103,755	+		IAI47_05215	0.78	-1.8
1,103,755	+		IAI47_05215	0.78	-1.9
1,103,756	-		IAI47_05215	0.78	-0.8
1,103,756	-		IAI47_05215	0.78	+0.3
1,103,756	-		IAI47_05215	0.78	+0.7
1,103,756	-		IAI47_05215	0.78	+0.2
1,103,756	-		IAI47_05215	0.78	-1.6
1,103,756	-		IAI47_05215	0.78	+1.1
1,103,756	-		IAI47_05215	0.78	+1.2
1,103,756	-		IAI47_05215	0.78	+0.5
1,103,756	-		IAI47_05215	0.78	+2.2
1,103,756	-		IAI47_05215	0.78	+0.3
1,103,821	+		IAI47_05215	0.89	-0.9
1,103,821	+		IAI47_05215	0.89	+0.7
1,103,821	+		IAI47_05215	0.89	+0.3
1,103,821	+		IAI47_05215	0.89	+0.5
1,103,821	+		IAI47_05215	0.89	-1.0
1,103,821	+		IAI47_05215	0.89	+0.2
1,103,821	+		IAI47_05215	0.89	+1.5
1,103,822	-		IAI47_05215	0.89	+0.5
1,103,822	-		IAI47_05215	0.89	+1.1
1,103,822	-		IAI47_05215	0.89	+0.7
1,103,822	-		IAI47_05215	0.89	+1.3
1,103,822	-		IAI47_05215	0.89	+0.1
1,103,822	-		IAI47_05215	0.89	-1.0
1,103,822	-		IAI47_05215	0.89	-0.5
1,103,822	-		IAI47_05215	0.89	-0.8
1,103,823	-		IAI47_05215	0.89	+0.0
1,103,867	+				+0.4
1,103,885	+				+0.4
1,103,885	+				-0.3
1,103,886	-				-1.8
1,103,886	-				+0.3
1,103,886	-				-0.0
1,103,886	-				+1.4
1,103,886	-				-0.2
1,103,886	-				+0.0
1,103,941	+				-0.8
1,103,941	+				-1.8
1,103,942	-				-1.4
1,103,942	-				+0.2
1,103,946	-				-0.5
1,103,952	+				+2.0
1,103,952	+				-0.8
1,103,952	+				+2.9
1,103,952	+				-0.8
1,103,952	+				+1.0
1,103,952	+				-2.0
1,103,952	+				+0.7
1,103,953	-				-0.9
1,103,953	-				+2.8
1,103,953	-				+1.7
1,103,953	-				-0.7
1,103,954	+				-1.0
1,103,954	+				-2.7
1,103,954	+				+2.5
1,103,954	+				-1.1
1,103,954	+				-1.0
1,103,954	+				-1.3
1,103,954	+				+1.2
1,103,955	-				+0.2
1,103,964	-				-0.5
1,103,968	+				-0.8
1,103,969	-				+1.0
1,103,969	-				-0.6
1,104,023	+				+0.5
1,104,032	+				+2.0
1,104,140	+		IAI47_05220	0.12	-1.4
1,104,140	+		IAI47_05220	0.12	+0.8
1,104,141	-		IAI47_05220	0.13	-1.5
1,104,157	+		IAI47_05220	0.14	-0.7
1,104,157	+		IAI47_05220	0.14	+3.1
1,104,157	+		IAI47_05220	0.14	+1.6
1,104,157	+		IAI47_05220	0.14	+1.6
1,104,157	+		IAI47_05220	0.14	-1.2
1,104,158	-				+1.5
1,104,203	+		IAI47_05220	0.19	+0.6
1,104,203	+		IAI47_05220	0.19	-3.0
1,104,204	-		IAI47_05220	0.19	+1.4
1,104,204	-		IAI47_05220	0.19	+0.2
1,104,204	-		IAI47_05220	0.19	-0.7
1,104,281	-		IAI47_05220	0.26	+0.2
1,104,307	+		IAI47_05220	0.29	-0.6
1,104,308	-		IAI47_05220	0.29	+0.3
1,104,308	-		IAI47_05220	0.29	+1.2
1,104,308	-		IAI47_05220	0.29	+0.4
1,104,342	+		IAI47_05220	0.32	+1.0
1,104,342	+		IAI47_05220	0.32	-0.0
1,104,342	+		IAI47_05220	0.32	-0.9
1,104,342	+		IAI47_05220	0.32	-1.2
1,104,342	+		IAI47_05220	0.32	+1.0
1,104,342	+		IAI47_05220	0.32	+1.6
1,104,342	+		IAI47_05220	0.32	+1.2
1,104,342	+		IAI47_05220	0.32	+0.5
1,104,342	+		IAI47_05220	0.32	-0.6
1,104,342	+		IAI47_05220	0.32	+0.4
1,104,342	+		IAI47_05220	0.32	-0.8
1,104,343	-		IAI47_05220	0.32	-0.2
1,104,343	-		IAI47_05220	0.32	+1.7
1,104,343	-		IAI47_05220	0.32	-0.7
1,104,343	-		IAI47_05220	0.32	+0.6
1,104,343	-		IAI47_05220	0.32	-0.2
1,104,343	-		IAI47_05220	0.32	+0.7
1,104,343	-		IAI47_05220	0.32	-2.2
1,104,343	-		IAI47_05220	0.32	-0.3
1,104,440	+		IAI47_05220	0.42	-2.2
1,104,440	+		IAI47_05220	0.42	-1.4
1,104,441	-		IAI47_05220	0.42	+0.5
1,104,441	-		IAI47_05220	0.42	-1.3
1,104,610	+		IAI47_05220	0.58	+2.4
1,104,672	+		IAI47_05220	0.64	+1.3
1,104,673	-		IAI47_05220	0.65	+1.3
1,104,745	-		IAI47_05220	0.72	-0.6
1,104,759	+		IAI47_05220	0.73	-1.0
1,104,759	+		IAI47_05220	0.73	+0.8
1,104,760	-		IAI47_05220	0.73	-1.3