Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00790

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00785 and AO353_00790 are separated by 15 nucleotidesAO353_00790 and AO353_00795 are separated by 379 nucleotides AO353_00785: AO353_00785 - nitrate transporter, at 177,230 to 178,441 _00785 AO353_00790: AO353_00790 - histidine kinase, at 178,457 to 179,032 _00790 AO353_00795: AO353_00795 - MFS transporter, at 179,412 to 180,623 _00795 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 177.464 kb on + strand, within AO353_00785at 177.464 kb on + strand, within AO353_00785at 177.464 kb on + strand, within AO353_00785at 177.464 kb on + strand, within AO353_00785at 177.464 kb on + strand, within AO353_00785at 177.464 kb on + strand, within AO353_00785at 177.464 kb on + strand, within AO353_00785at 177.465 kb on - strandat 177.476 kb on + strand, within AO353_00785at 177.476 kb on + strand, within AO353_00785at 177.476 kb on + strand, within AO353_00785at 177.476 kb on + strand, within AO353_00785at 177.476 kb on + strand, within AO353_00785at 177.476 kb on + strand, within AO353_00785at 177.477 kb on - strand, within AO353_00785at 177.477 kb on - strand, within AO353_00785at 177.477 kb on - strand, within AO353_00785at 177.477 kb on - strand, within AO353_00785at 177.477 kb on - strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.689 kb on + strand, within AO353_00785at 177.690 kb on - strand, within AO353_00785at 177.690 kb on - strand, within AO353_00785at 177.690 kb on - strand, within AO353_00785at 177.690 kb on - strand, within AO353_00785at 177.690 kb on - strand, within AO353_00785at 177.692 kb on + strand, within AO353_00785at 178.040 kb on + strand, within AO353_00785at 178.235 kb on + strand, within AO353_00785at 178.236 kb on - strand, within AO353_00785at 178.353 kb on + strandat 178.354 kb on - strandat 178.379 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.456 kb on + strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.457 kb on - strandat 178.751 kb on + strand, within AO353_00790at 178.751 kb on + strand, within AO353_00790at 178.751 kb on + strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.752 kb on - strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.940 kb on + strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 178.941 kb on - strand, within AO353_00790at 179.102 kb on + strandat 179.112 kb on + strandat 179.112 kb on + strandat 179.112 kb on + strandat 179.113 kb on - strandat 179.188 kb on + strandat 179.192 kb on + strandat 179.193 kb on - strandat 179.196 kb on + strandat 179.196 kb on + strandat 179.218 kb on + strandat 179.254 kb on + strandat 179.254 kb on + strandat 179.255 kb on - strandat 179.255 kb on - strandat 179.255 kb on - strandat 179.469 kb on + strandat 179.469 kb on + strandat 179.469 kb on + strandat 179.470 kb on - strandat 179.496 kb on + strandat 179.496 kb on + strandat 179.497 kb on - strandat 179.497 kb on - strandat 179.716 kb on - strand, within AO353_00795at 179.716 kb on - strand, within AO353_00795at 179.716 kb on - strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.015 kb on + strand, within AO353_00795at 180.016 kb on - strand, within AO353_00795at 180.016 kb on - strand, within AO353_00795

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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177,464 + AO353_00785 0.19 -0.2
177,464 + AO353_00785 0.19 -2.4
177,464 + AO353_00785 0.19 +0.4
177,464 + AO353_00785 0.19 -1.5
177,464 + AO353_00785 0.19 -1.4
177,464 + AO353_00785 0.19 -0.8
177,464 + AO353_00785 0.19 +0.1
177,465 - +0.1
177,476 + AO353_00785 0.20 -2.1
177,476 + AO353_00785 0.20 -2.6
177,476 + AO353_00785 0.20 -0.8
177,476 + AO353_00785 0.20 -0.5
177,476 + AO353_00785 0.20 -1.0
177,476 + AO353_00785 0.20 -0.5
177,477 - AO353_00785 0.20 -1.8
177,477 - AO353_00785 0.20 -1.6
177,477 - AO353_00785 0.20 -1.3
177,477 - AO353_00785 0.20 -2.0
177,477 - AO353_00785 0.20 -1.7
177,689 + AO353_00785 0.38 +0.1
177,689 + AO353_00785 0.38 -1.0
177,689 + AO353_00785 0.38 -1.0
177,689 + AO353_00785 0.38 -2.3
177,689 + AO353_00785 0.38 -0.3
177,689 + AO353_00785 0.38 -1.8
177,689 + AO353_00785 0.38 -1.7
177,689 + AO353_00785 0.38 +0.9
177,689 + AO353_00785 0.38 -1.1
177,689 + AO353_00785 0.38 -1.3
177,689 + AO353_00785 0.38 -0.1
177,689 + AO353_00785 0.38 -0.6
177,689 + AO353_00785 0.38 -1.0
177,689 + AO353_00785 0.38 -0.9
177,689 + AO353_00785 0.38 +0.5
177,689 + AO353_00785 0.38 -0.3
177,690 - AO353_00785 0.38 -1.1
177,690 - AO353_00785 0.38 -1.3
177,690 - AO353_00785 0.38 -2.8
177,690 - AO353_00785 0.38 -1.5
177,690 - AO353_00785 0.38 -0.3
177,692 + AO353_00785 0.38 -0.3
178,040 + AO353_00785 0.67 +1.0
178,235 + AO353_00785 0.83 +0.4
178,236 - AO353_00785 0.83 -4.0
178,353 + -0.9
178,354 - -1.8
178,379 + -0.1
178,456 + -0.5
178,456 + -1.2
178,456 + -2.6
178,456 + -0.1
178,456 + -1.5
178,456 + -0.9
178,456 + -2.0
178,456 + +0.7
178,456 + -1.4
178,456 + -1.1
178,456 + -0.3
178,457 - -1.9
178,457 - +0.3
178,457 - -1.1
178,457 - -1.9
178,457 - -2.5
178,457 - -2.3
178,457 - -2.0
178,457 - -2.8
178,457 - -1.7
178,751 + AO353_00790 0.51 -2.6
178,751 + AO353_00790 0.51 -0.3
178,751 + AO353_00790 0.51 -1.6
178,752 - AO353_00790 0.51 -1.0
178,752 - AO353_00790 0.51 -0.8
178,752 - AO353_00790 0.51 -2.0
178,752 - AO353_00790 0.51 -0.1
178,752 - AO353_00790 0.51 -1.1
178,752 - AO353_00790 0.51 -1.0
178,752 - AO353_00790 0.51 -2.6
178,752 - AO353_00790 0.51 -2.0
178,752 - AO353_00790 0.51 -2.7
178,752 - AO353_00790 0.51 -3.3
178,752 - AO353_00790 0.51 -2.1
178,752 - AO353_00790 0.51 -1.8
178,940 + AO353_00790 0.84 -1.3
178,940 + AO353_00790 0.84 -0.3
178,940 + AO353_00790 0.84 -1.1
178,940 + AO353_00790 0.84 -2.1
178,940 + AO353_00790 0.84 -1.4
178,940 + AO353_00790 0.84 -2.3
178,940 + AO353_00790 0.84 -1.9
178,940 + AO353_00790 0.84 -1.6
178,941 - AO353_00790 0.84 -1.6
178,941 - AO353_00790 0.84 -3.1
178,941 - AO353_00790 0.84 -2.2
178,941 - AO353_00790 0.84 -1.9
179,102 + +0.5
179,112 + -0.6
179,112 + -0.5
179,112 + +1.2
179,113 - +0.2
179,188 + -0.0
179,192 + +1.4
179,193 - -0.8
179,196 + +0.8
179,196 + +1.0
179,218 + -0.6
179,254 + -1.1
179,254 + +0.4
179,255 - -0.9
179,255 - -1.2
179,255 - -1.5
179,469 + -1.5
179,469 + -1.5
179,469 + -1.3
179,470 - -3.0
179,496 + -0.6
179,496 + -2.7
179,497 - -3.4
179,497 - -1.2
179,716 - AO353_00795 0.25 -1.9
179,716 - AO353_00795 0.25 -1.6
179,716 - AO353_00795 0.25 -0.3
180,015 + AO353_00795 0.50 -0.8
180,015 + AO353_00795 0.50 -2.2
180,015 + AO353_00795 0.50 -2.0
180,015 + AO353_00795 0.50 -0.8
180,016 - AO353_00795 0.50 -2.4
180,016 - AO353_00795 0.50 -2.0

Or see this region's nucleotide sequence