Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_773

Experiment: selenite 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_772 and Pf6N2E2_773 are separated by 273 nucleotidesPf6N2E2_773 and Pf6N2E2_774 overlap by 4 nucleotidesPf6N2E2_774 and Pf6N2E2_775 are separated by 4 nucleotidesPf6N2E2_775 and Pf6N2E2_776 overlap by 4 nucleotides Pf6N2E2_772 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 882,325 to 883,959 _772 Pf6N2E2_773 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 884,233 to 885,063 _773 Pf6N2E2_774 - Cold-shock DNA-binding domain, at 885,060 to 885,479 _774 Pf6N2E2_775 - FIG00955061: hypothetical protein, at 885,484 to 885,834 _775 Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739 _776 Position (kb) 884 885 886Strain fitness (log2 ratio) -2 -1 0 1 2at 883.427 kb on + strand, within Pf6N2E2_772at 883.428 kb on - strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.476 kb on - strand, within Pf6N2E2_772at 883.523 kb on + strand, within Pf6N2E2_772at 883.524 kb on - strand, within Pf6N2E2_772at 883.524 kb on - strand, within Pf6N2E2_772at 883.524 kb on - strand, within Pf6N2E2_772at 883.683 kb on - strand, within Pf6N2E2_772at 883.697 kb on + strand, within Pf6N2E2_772at 883.698 kb on - strand, within Pf6N2E2_772at 883.698 kb on - strand, within Pf6N2E2_772at 883.712 kb on - strand, within Pf6N2E2_772at 883.778 kb on + strand, within Pf6N2E2_772at 883.779 kb on - strand, within Pf6N2E2_772at 883.781 kb on + strand, within Pf6N2E2_772at 883.781 kb on + strand, within Pf6N2E2_772at 883.864 kb on - strandat 883.864 kb on - strandat 883.864 kb on - strandat 883.953 kb on + strandat 883.953 kb on + strandat 883.954 kb on - strandat 883.954 kb on - strandat 883.959 kb on + strandat 883.960 kb on - strandat 883.960 kb on - strandat 883.981 kb on - strandat 883.981 kb on - strandat 883.991 kb on + strandat 883.991 kb on + strandat 884.009 kb on + strandat 884.076 kb on + strandat 884.273 kb on + strandat 884.325 kb on + strand, within Pf6N2E2_773at 884.325 kb on + strand, within Pf6N2E2_773at 884.837 kb on - strand, within Pf6N2E2_773at 884.846 kb on - strand, within Pf6N2E2_773at 884.846 kb on - strand, within Pf6N2E2_773at 884.851 kb on + strand, within Pf6N2E2_773at 884.968 kb on + strand, within Pf6N2E2_773at 884.968 kb on + strand, within Pf6N2E2_773at 884.968 kb on + strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 885.469 kb on - strandat 885.485 kb on + strandat 885.486 kb on - strandat 885.486 kb on - strandat 885.624 kb on - strand, within Pf6N2E2_775at 885.770 kb on + strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.834 kb on + strandat 885.842 kb on + strandat 885.843 kb on - strandat 885.843 kb on - strandat 885.843 kb on - strandat 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strandat 886.006 kb on + strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.010 kb on + strand, within Pf6N2E2_776at 886.010 kb on + strand, within Pf6N2E2_776at 886.011 kb on - strand, within Pf6N2E2_776at 886.020 kb on + strand, within Pf6N2E2_776

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Per-strain Table

Position Strand Gene LocusTag Fraction selenite 0.0025 M
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883,427 + Pf6N2E2_772 0.67 +0.9
883,428 - Pf6N2E2_772 0.67 +0.0
883,475 + Pf6N2E2_772 0.70 -1.4
883,475 + Pf6N2E2_772 0.70 +0.7
883,475 + Pf6N2E2_772 0.70 +1.8
883,475 + Pf6N2E2_772 0.70 +0.2
883,476 - Pf6N2E2_772 0.70 -0.2
883,523 + Pf6N2E2_772 0.73 -2.3
883,524 - Pf6N2E2_772 0.73 +0.3
883,524 - Pf6N2E2_772 0.73 -0.3
883,524 - Pf6N2E2_772 0.73 +0.5
883,683 - Pf6N2E2_772 0.83 +0.1
883,697 + Pf6N2E2_772 0.84 +1.4
883,698 - Pf6N2E2_772 0.84 +0.4
883,698 - Pf6N2E2_772 0.84 -0.6
883,712 - Pf6N2E2_772 0.85 +0.3
883,778 + Pf6N2E2_772 0.89 +0.1
883,779 - Pf6N2E2_772 0.89 +0.2
883,781 + Pf6N2E2_772 0.89 -0.7
883,781 + Pf6N2E2_772 0.89 +0.4
883,864 - +1.4
883,864 - +0.5
883,864 - +1.4
883,953 + +0.0
883,953 + -0.5
883,954 - +0.7
883,954 - +0.2
883,959 + +1.6
883,960 - +0.4
883,960 - -1.8
883,981 - +0.7
883,981 - -0.3
883,991 + -0.5
883,991 + -0.7
884,009 + -1.3
884,076 + +0.1
884,273 + +0.1
884,325 + Pf6N2E2_773 0.11 -0.5
884,325 + Pf6N2E2_773 0.11 +0.3
884,837 - Pf6N2E2_773 0.73 +0.7
884,846 - Pf6N2E2_773 0.74 -1.2
884,846 - Pf6N2E2_773 0.74 -0.0
884,851 + Pf6N2E2_773 0.74 -0.3
884,968 + Pf6N2E2_773 0.88 +0.2
884,968 + Pf6N2E2_773 0.88 -0.7
884,968 + Pf6N2E2_773 0.88 -1.0
884,969 - Pf6N2E2_773 0.89 +1.1
884,969 - Pf6N2E2_773 0.89 -0.0
884,969 - Pf6N2E2_773 0.89 +1.0
884,969 - Pf6N2E2_773 0.89 +0.7
884,969 - Pf6N2E2_773 0.89 +0.6
884,969 - Pf6N2E2_773 0.89 +0.4
885,469 - -1.1
885,485 + +0.7
885,486 - +1.3
885,486 - +0.9
885,624 - Pf6N2E2_775 0.40 +0.1
885,770 + Pf6N2E2_775 0.81 -0.4
885,771 - Pf6N2E2_775 0.82 +1.1
885,771 - Pf6N2E2_775 0.82 +1.1
885,771 - Pf6N2E2_775 0.82 +0.6
885,771 - Pf6N2E2_775 0.82 -0.5
885,771 - Pf6N2E2_775 0.82 +0.5
885,834 + -1.6
885,842 + -0.2
885,843 - +0.3
885,843 - -0.0
885,843 - -0.8
886,006 + Pf6N2E2_776 0.19 +0.8
886,006 + Pf6N2E2_776 0.19 -1.2
886,006 + Pf6N2E2_776 0.19 +1.0
886,006 + Pf6N2E2_776 0.19 -1.2
886,006 + Pf6N2E2_776 0.19 +0.3
886,006 + -0.6
886,006 + Pf6N2E2_776 0.19 -0.6
886,007 - Pf6N2E2_776 0.19 -0.8
886,007 - Pf6N2E2_776 0.19 -0.4
886,007 - Pf6N2E2_776 0.19 -1.4
886,010 + Pf6N2E2_776 0.20 -2.2
886,010 + Pf6N2E2_776 0.20 -0.1
886,011 - Pf6N2E2_776 0.20 +0.8
886,020 + Pf6N2E2_776 0.21 +0.1

Or see this region's nucleotide sequence