Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4061

Experiment: selenite 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4060 and Pf6N2E2_4061 are separated by 30 nucleotidesPf6N2E2_4061 and Pf6N2E2_4062 overlap by 4 nucleotidesPf6N2E2_4062 and Pf6N2E2_4063 overlap by 2 nucleotidesPf6N2E2_4063 and Pf6N2E2_4064 overlap by 1 nucleotides Pf6N2E2_4060 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 4,737,038 to 4,738,198 _4060 Pf6N2E2_4061 - Rubredoxin, at 4,738,229 to 4,738,396 _4061 Pf6N2E2_4062 - hypothetical protein, at 4,738,393 to 4,738,548 _4062 Pf6N2E2_4063 - Chorismate--pyruvate lyase (EC 4.1.3.40), at 4,738,547 to 4,739,152 _4063 Pf6N2E2_4064 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 4,739,152 to 4,740,042 _4064 Position (kb) 4738 4739Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4737.258 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.375 kb on + strand, within Pf6N2E2_4060at 4737.375 kb on + strand, within Pf6N2E2_4060at 4737.375 kb on + strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.614 kb on + strand, within Pf6N2E2_4060at 4737.614 kb on + strand, within Pf6N2E2_4060at 4737.615 kb on - strand, within Pf6N2E2_4060at 4737.687 kb on + strand, within Pf6N2E2_4060at 4737.688 kb on - strand, within Pf6N2E2_4060at 4737.688 kb on - strand, within Pf6N2E2_4060at 4737.688 kb on - strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.790 kb on - strand, within Pf6N2E2_4060at 4737.790 kb on - strand, within Pf6N2E2_4060at 4737.790 kb on - strand, within Pf6N2E2_4060at 4737.888 kb on + strand, within Pf6N2E2_4060at 4737.889 kb on - strand, within Pf6N2E2_4060at 4738.065 kb on + strand, within Pf6N2E2_4060at 4738.144 kb on - strandat 4738.144 kb on - strandat 4738.359 kb on + strand, within Pf6N2E2_4061at 4738.360 kb on - strand, within Pf6N2E2_4061at 4738.378 kb on + strand, within Pf6N2E2_4061at 4738.378 kb on + strand, within Pf6N2E2_4061at 4738.378 kb on + strand, within Pf6N2E2_4061at 4738.378 kb on + strand, within Pf6N2E2_4061at 4738.379 kb on - strand, within Pf6N2E2_4061at 4738.379 kb on - strand, within Pf6N2E2_4061at 4738.379 kb on - strand, within Pf6N2E2_4061at 4738.379 kb on - strand, within Pf6N2E2_4061at 4738.379 kb on - strand, within Pf6N2E2_4061at 4738.402 kb on + strandat 4738.402 kb on + strandat 4738.403 kb on - strandat 4738.403 kb on - strandat 4738.403 kb on - strandat 4738.433 kb on + strand, within Pf6N2E2_4062at 4738.433 kb on + strand, within Pf6N2E2_4062at 4738.433 kb on + strand, within Pf6N2E2_4062at 4738.433 kb on + strand, within Pf6N2E2_4062at 4738.433 kb on + strand, within Pf6N2E2_4062at 4738.434 kb on - strand, within Pf6N2E2_4062at 4738.434 kb on - strand, within Pf6N2E2_4062at 4738.551 kb on + strandat 4738.551 kb on + strandat 4738.552 kb on - strandat 4738.552 kb on - strandat 4738.552 kb on - strandat 4738.597 kb on + strandat 4738.835 kb on + strand, within Pf6N2E2_4063at 4738.835 kb on + strand, within Pf6N2E2_4063at 4738.835 kb on + strand, within Pf6N2E2_4063at 4738.835 kb on + strand, within Pf6N2E2_4063at 4738.836 kb on - strand, within Pf6N2E2_4063at 4738.836 kb on - strand, within Pf6N2E2_4063at 4738.836 kb on - strand, within Pf6N2E2_4063at 4738.953 kb on + strand, within Pf6N2E2_4063at 4739.088 kb on + strand, within Pf6N2E2_4063at 4739.089 kb on - strand, within Pf6N2E2_4063at 4739.089 kb on - strand, within Pf6N2E2_4063at 4739.089 kb on - strand, within Pf6N2E2_4063at 4739.135 kb on + strandat 4739.155 kb on + strandat 4739.155 kb on + strandat 4739.155 kb on + strandat 4739.155 kb on + strandat 4739.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction selenite 0.0025 M
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4,737,258 + Pf6N2E2_4060 0.19 +0.9
4,737,330 + Pf6N2E2_4060 0.25 -1.0
4,737,330 + Pf6N2E2_4060 0.25 -0.0
4,737,330 + Pf6N2E2_4060 0.25 -0.4
4,737,330 + Pf6N2E2_4060 0.25 -0.9
4,737,330 + Pf6N2E2_4060 0.25 -0.6
4,737,330 + Pf6N2E2_4060 0.25 -0.6
4,737,330 + Pf6N2E2_4060 0.25 -0.3
4,737,330 + Pf6N2E2_4060 0.25 -1.6
4,737,330 + Pf6N2E2_4060 0.25 +0.5
4,737,330 + Pf6N2E2_4060 0.25 -0.4
4,737,330 + Pf6N2E2_4060 0.25 +0.1
4,737,331 - Pf6N2E2_4060 0.25 -2.5
4,737,331 - Pf6N2E2_4060 0.25 +0.3
4,737,331 - Pf6N2E2_4060 0.25 +0.0
4,737,331 - Pf6N2E2_4060 0.25 -1.5
4,737,331 - Pf6N2E2_4060 0.25 -0.3
4,737,331 - Pf6N2E2_4060 0.25 +1.5
4,737,331 - Pf6N2E2_4060 0.25 -0.2
4,737,331 - Pf6N2E2_4060 0.25 +0.7
4,737,331 - Pf6N2E2_4060 0.25 +0.1
4,737,331 - Pf6N2E2_4060 0.25 +0.3
4,737,331 - Pf6N2E2_4060 0.25 +2.8
4,737,331 - Pf6N2E2_4060 0.25 -1.2
4,737,331 - Pf6N2E2_4060 0.25 -0.1
4,737,375 + Pf6N2E2_4060 0.29 -0.2
4,737,375 + Pf6N2E2_4060 0.29 +0.3
4,737,375 + Pf6N2E2_4060 0.29 +0.8
4,737,376 - Pf6N2E2_4060 0.29 -0.6
4,737,376 - Pf6N2E2_4060 0.29 -1.2
4,737,376 - Pf6N2E2_4060 0.29 -0.6
4,737,376 - Pf6N2E2_4060 0.29 -1.2
4,737,376 - Pf6N2E2_4060 0.29 -0.1
4,737,376 - Pf6N2E2_4060 0.29 -0.6
4,737,376 - Pf6N2E2_4060 0.29 +0.2
4,737,614 + Pf6N2E2_4060 0.50 +0.2
4,737,614 + Pf6N2E2_4060 0.50 -1.2
4,737,615 - Pf6N2E2_4060 0.50 -0.3
4,737,687 + Pf6N2E2_4060 0.56 -0.0
4,737,688 - Pf6N2E2_4060 0.56 -0.2
4,737,688 - Pf6N2E2_4060 0.56 +0.1
4,737,688 - Pf6N2E2_4060 0.56 -0.2
4,737,789 + Pf6N2E2_4060 0.65 -0.2
4,737,789 + Pf6N2E2_4060 0.65 +0.3
4,737,789 + Pf6N2E2_4060 0.65 +0.3
4,737,789 + Pf6N2E2_4060 0.65 +0.0
4,737,790 - Pf6N2E2_4060 0.65 +0.4
4,737,790 - Pf6N2E2_4060 0.65 +0.1
4,737,790 - Pf6N2E2_4060 0.65 +0.4
4,737,888 + Pf6N2E2_4060 0.73 +0.4
4,737,889 - Pf6N2E2_4060 0.73 +0.1
4,738,065 + Pf6N2E2_4060 0.88 -0.3
4,738,144 - +0.5
4,738,144 - +0.4
4,738,359 + Pf6N2E2_4061 0.77 +1.8
4,738,360 - Pf6N2E2_4061 0.78 +0.1
4,738,378 + Pf6N2E2_4061 0.89 +0.6
4,738,378 + Pf6N2E2_4061 0.89 +2.3
4,738,378 + Pf6N2E2_4061 0.89 +2.4
4,738,378 + Pf6N2E2_4061 0.89 +1.4
4,738,379 - Pf6N2E2_4061 0.89 +0.2
4,738,379 - Pf6N2E2_4061 0.89 -0.0
4,738,379 - Pf6N2E2_4061 0.89 -0.7
4,738,379 - Pf6N2E2_4061 0.89 -0.4
4,738,379 - Pf6N2E2_4061 0.89 +0.7
4,738,402 + +0.1
4,738,402 + -0.6
4,738,403 - +1.8
4,738,403 - -0.6
4,738,403 - -1.2
4,738,433 + Pf6N2E2_4062 0.26 -0.3
4,738,433 + Pf6N2E2_4062 0.26 +0.0
4,738,433 + Pf6N2E2_4062 0.26 +0.3
4,738,433 + Pf6N2E2_4062 0.26 -1.6
4,738,433 + Pf6N2E2_4062 0.26 -1.5
4,738,434 - Pf6N2E2_4062 0.26 -0.2
4,738,434 - Pf6N2E2_4062 0.26 +1.2
4,738,551 + +1.4
4,738,551 + +0.1
4,738,552 - -1.0
4,738,552 - -1.0
4,738,552 - +0.0
4,738,597 + -0.3
4,738,835 + Pf6N2E2_4063 0.48 +1.0
4,738,835 + Pf6N2E2_4063 0.48 +1.0
4,738,835 + Pf6N2E2_4063 0.48 +0.1
4,738,835 + Pf6N2E2_4063 0.48 -0.1
4,738,836 - Pf6N2E2_4063 0.48 -1.2
4,738,836 - Pf6N2E2_4063 0.48 +0.2
4,738,836 - Pf6N2E2_4063 0.48 +1.9
4,738,953 + Pf6N2E2_4063 0.67 -0.5
4,739,088 + Pf6N2E2_4063 0.89 -0.1
4,739,089 - Pf6N2E2_4063 0.89 -0.7
4,739,089 - Pf6N2E2_4063 0.89 -0.6
4,739,089 - Pf6N2E2_4063 0.89 -0.5
4,739,135 + +0.2
4,739,155 + +0.3
4,739,155 + -1.3
4,739,155 + +0.8
4,739,155 + +0.1
4,739,155 + -0.7

Or see this region's nucleotide sequence