Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1880

Experiment: selenite 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1879 and Pf6N2E2_1880 are separated by 256 nucleotidesPf6N2E2_1880 and Pf6N2E2_1881 are separated by 83 nucleotidesPf6N2E2_1881 and Pf6N2E2_1882 are separated by 56 nucleotides Pf6N2E2_1879 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 2,231,090 to 2,232,625 _1879 Pf6N2E2_1880 - Putative protein-S-isoprenylcysteine methyltransferase, at 2,232,882 to 2,233,355 _1880 Pf6N2E2_1881 - Antibiotic biosynthesis monooxygenase, at 2,233,439 to 2,233,819 _1881 Pf6N2E2_1882 - Thioredoxin reductase (EC 1.8.1.9), at 2,233,876 to 2,234,769 _1882 Position (kb) 2232 2233 2234Strain fitness (log2 ratio) -2 -1 0 1 2at 2232.013 kb on + strand, within Pf6N2E2_1879at 2232.053 kb on + strand, within Pf6N2E2_1879at 2232.053 kb on + strand, within Pf6N2E2_1879at 2232.053 kb on + strand, within Pf6N2E2_1879at 2232.054 kb on - strand, within Pf6N2E2_1879at 2232.157 kb on - strand, within Pf6N2E2_1879at 2232.186 kb on + strand, within Pf6N2E2_1879at 2232.197 kb on + strand, within Pf6N2E2_1879at 2232.198 kb on - strand, within Pf6N2E2_1879at 2232.290 kb on - strand, within Pf6N2E2_1879at 2232.294 kb on - strand, within Pf6N2E2_1879at 2232.344 kb on + strand, within Pf6N2E2_1879at 2232.403 kb on - strand, within Pf6N2E2_1879at 2232.411 kb on + strand, within Pf6N2E2_1879at 2232.447 kb on - strand, within Pf6N2E2_1879at 2232.447 kb on - strand, within Pf6N2E2_1879at 2232.489 kb on + strandat 2232.521 kb on + strandat 2232.607 kb on - strandat 2232.639 kb on + strandat 2232.644 kb on + strandat 2232.644 kb on + strandat 2232.658 kb on + strandat 2232.658 kb on + strandat 2232.685 kb on + strandat 2232.685 kb on + strandat 2232.686 kb on - strandat 2232.691 kb on + strandat 2232.735 kb on + strandat 2232.735 kb on + strandat 2232.736 kb on - strandat 2232.794 kb on + strandat 2232.794 kb on + strandat 2232.795 kb on - strandat 2232.803 kb on + strandat 2232.803 kb on + strandat 2232.813 kb on + strandat 2232.879 kb on + strandat 2232.946 kb on + strand, within Pf6N2E2_1880at 2232.946 kb on + strand, within Pf6N2E2_1880at 2233.048 kb on + strand, within Pf6N2E2_1880at 2233.049 kb on - strand, within Pf6N2E2_1880at 2233.049 kb on - strand, within Pf6N2E2_1880at 2233.049 kb on - strand, within Pf6N2E2_1880at 2233.052 kb on + strand, within Pf6N2E2_1880at 2233.069 kb on + strand, within Pf6N2E2_1880at 2233.070 kb on - strand, within Pf6N2E2_1880at 2233.070 kb on - strand, within Pf6N2E2_1880at 2233.070 kb on - strand, within Pf6N2E2_1880at 2233.260 kb on - strand, within Pf6N2E2_1880at 2233.303 kb on + strand, within Pf6N2E2_1880at 2233.303 kb on + strand, within Pf6N2E2_1880at 2233.308 kb on + strandat 2233.308 kb on + strandat 2233.309 kb on - strandat 2233.309 kb on - strandat 2233.355 kb on + strandat 2233.356 kb on - strandat 2233.356 kb on - strandat 2233.356 kb on - strandat 2233.356 kb on - strandat 2233.356 kb on - strandat 2233.428 kb on + strandat 2233.429 kb on - strandat 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.584 kb on + strand, within Pf6N2E2_1881at 2233.585 kb on - strand, within Pf6N2E2_1881at 2233.585 kb on - strand, within Pf6N2E2_1881at 2233.585 kb on - strand, within Pf6N2E2_1881at 2233.585 kb on - strand, within Pf6N2E2_1881at 2233.585 kb on - strand, within Pf6N2E2_1881at 2233.594 kb on - strand, within Pf6N2E2_1881at 2233.655 kb on + strand, within Pf6N2E2_1881at 2233.656 kb on - strand, within Pf6N2E2_1881at 2233.980 kb on - strand, within Pf6N2E2_1882at 2233.980 kb on - strand, within Pf6N2E2_1882at 2233.980 kb on - strand, within Pf6N2E2_1882at 2233.980 kb on - strand, within Pf6N2E2_1882at 2233.980 kb on - strand, within Pf6N2E2_1882at 2233.980 kb on - strand, within Pf6N2E2_1882at 2234.119 kb on + strand, within Pf6N2E2_1882at 2234.120 kb on - strand, within Pf6N2E2_1882at 2234.158 kb on - strand, within Pf6N2E2_1882at 2234.206 kb on + strand, within Pf6N2E2_1882at 2234.206 kb on + strand, within Pf6N2E2_1882at 2234.206 kb on + strand, within Pf6N2E2_1882at 2234.206 kb on + strand, within Pf6N2E2_1882at 2234.207 kb on - strand, within Pf6N2E2_1882at 2234.207 kb on - strand, within Pf6N2E2_1882at 2234.207 kb on - strand, within Pf6N2E2_1882

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Per-strain Table

Position Strand Gene LocusTag Fraction selenite 0.0025 M
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2,232,013 + Pf6N2E2_1879 0.60 +0.6
2,232,053 + Pf6N2E2_1879 0.63 +0.4
2,232,053 + Pf6N2E2_1879 0.63 +0.1
2,232,053 + Pf6N2E2_1879 0.63 -0.0
2,232,054 - Pf6N2E2_1879 0.63 +0.4
2,232,157 - Pf6N2E2_1879 0.69 +1.0
2,232,186 + Pf6N2E2_1879 0.71 +1.6
2,232,197 + Pf6N2E2_1879 0.72 +0.2
2,232,198 - Pf6N2E2_1879 0.72 +1.1
2,232,290 - Pf6N2E2_1879 0.78 +1.8
2,232,294 - Pf6N2E2_1879 0.78 -0.5
2,232,344 + Pf6N2E2_1879 0.82 +0.8
2,232,403 - Pf6N2E2_1879 0.85 +1.8
2,232,411 + Pf6N2E2_1879 0.86 +0.0
2,232,447 - Pf6N2E2_1879 0.88 +0.3
2,232,447 - Pf6N2E2_1879 0.88 -0.4
2,232,489 + -1.8
2,232,521 + -0.2
2,232,607 - +1.2
2,232,639 + +0.7
2,232,644 + -1.6
2,232,644 + -0.5
2,232,658 + +0.7
2,232,658 + -0.9
2,232,685 + +0.7
2,232,685 + -1.9
2,232,686 - +0.2
2,232,691 + -2.4
2,232,735 + +1.8
2,232,735 + -0.7
2,232,736 - +1.6
2,232,794 + +1.1
2,232,794 + +0.3
2,232,795 - -1.9
2,232,803 + -0.2
2,232,803 + +0.6
2,232,813 + +0.2
2,232,879 + +0.8
2,232,946 + Pf6N2E2_1880 0.14 +0.0
2,232,946 + Pf6N2E2_1880 0.14 -1.3
2,233,048 + Pf6N2E2_1880 0.35 +0.2
2,233,049 - Pf6N2E2_1880 0.35 -0.3
2,233,049 - Pf6N2E2_1880 0.35 -0.5
2,233,049 - Pf6N2E2_1880 0.35 -1.4
2,233,052 + Pf6N2E2_1880 0.36 -0.6
2,233,069 + Pf6N2E2_1880 0.39 -0.3
2,233,070 - Pf6N2E2_1880 0.40 -0.2
2,233,070 - Pf6N2E2_1880 0.40 -1.0
2,233,070 - Pf6N2E2_1880 0.40 -2.3
2,233,260 - Pf6N2E2_1880 0.80 -0.0
2,233,303 + Pf6N2E2_1880 0.89 +0.2
2,233,303 + Pf6N2E2_1880 0.89 +0.3
2,233,308 + +1.5
2,233,308 + -1.5
2,233,309 - +0.1
2,233,309 - +0.9
2,233,355 + -1.8
2,233,356 - +0.5
2,233,356 - +0.8
2,233,356 - +0.7
2,233,356 - -0.3
2,233,356 - -0.4
2,233,428 + -0.5
2,233,429 - -0.3
2,233,584 + Pf6N2E2_1881 0.38 -0.1
2,233,584 + Pf6N2E2_1881 0.38 +1.1
2,233,584 + Pf6N2E2_1881 0.38 -0.3
2,233,584 + Pf6N2E2_1881 0.38 -0.5
2,233,584 + Pf6N2E2_1881 0.38 -0.9
2,233,584 + Pf6N2E2_1881 0.38 +1.0
2,233,584 + Pf6N2E2_1881 0.38 -0.2
2,233,584 + Pf6N2E2_1881 0.38 +0.9
2,233,584 + Pf6N2E2_1881 0.38 +0.1
2,233,584 + Pf6N2E2_1881 0.38 +0.8
2,233,585 - Pf6N2E2_1881 0.38 -0.0
2,233,585 - Pf6N2E2_1881 0.38 -0.1
2,233,585 - Pf6N2E2_1881 0.38 +1.4
2,233,585 - Pf6N2E2_1881 0.38 -1.1
2,233,585 - Pf6N2E2_1881 0.38 +0.4
2,233,594 - Pf6N2E2_1881 0.41 -2.6
2,233,655 + Pf6N2E2_1881 0.57 -0.6
2,233,656 - Pf6N2E2_1881 0.57 +0.3
2,233,980 - Pf6N2E2_1882 0.12 +0.0
2,233,980 - Pf6N2E2_1882 0.12 +0.9
2,233,980 - Pf6N2E2_1882 0.12 +0.0
2,233,980 - Pf6N2E2_1882 0.12 -0.8
2,233,980 - Pf6N2E2_1882 0.12 -1.9
2,233,980 - Pf6N2E2_1882 0.12 +0.4
2,234,119 + Pf6N2E2_1882 0.27 -0.7
2,234,120 - Pf6N2E2_1882 0.27 +0.2
2,234,158 - Pf6N2E2_1882 0.32 +0.8
2,234,206 + Pf6N2E2_1882 0.37 +1.3
2,234,206 + Pf6N2E2_1882 0.37 +0.3
2,234,206 + Pf6N2E2_1882 0.37 +0.2
2,234,206 + Pf6N2E2_1882 0.37 +0.4
2,234,207 - Pf6N2E2_1882 0.37 +0.1
2,234,207 - Pf6N2E2_1882 0.37 -0.2
2,234,207 - Pf6N2E2_1882 0.37 +0.2

Or see this region's nucleotide sequence